RnoEX0029622 @ rn6
Exon Skipping
Gene
ENSRNOG00000002595 | Dpp10
Description
dipeptidylpeptidase 10 [Source:RGD Symbol;Acc:1306427]
Coordinates
chr13:39514242-39563643:-
Coord C1 exon
chr13:39563546-39563643
Coord A exon
chr13:39554663-39554786
Coord C2 exon
chr13:39514242-39514280
Length
124 bp
Sequences
Splice sites
3' ss Seq
ACTTTTTGTTTCCAAACTAGAGA
3' ss Score
6.54
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
Exon sequences
Seq C1 exon
GCAGGTCAAGCGAATCCATCAGTGAAGTTATATGTTGTAAACCTGTATGGACCAACTCATACTTTGGAGCTGATGCCACCCGACATTTTTAAATCAAG
Seq A exon
AGAATATTACATCACCATGGTTAAATGGGTGAGCAACACCAGGACAGTGGTCAGATGGTTGAATCGTCCTCAGAACATCTCCATCCTCACAGTCTGTGAGTCTACCACCGGGGCATGCAGTAGG
Seq C2 exon
AAATACGAAATGACATCTGACACCTGGATCTCTAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002595-'7-15,'7-13,8-15
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0093016=DPPIV_N=FE(8.9=100)
A:
PF0093016=DPPIV_N=FE(11.4=100)
C2:
PF0093016=DPPIV_N=FE(3.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGGTCAAGCGAATCCATCA
R:
AGAGATCCAGGTGTCAGATGTCA
Band lengths:
131-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]