DreEX6081794 @ danRer10
Exon Skipping
Gene
ENSDARG00000104767 | CR381531.1
Description
NA
Coordinates
chr23:33934269-33941893:+
Coord C1 exon
chr23:33934269-33934366
Coord A exon
chr23:33937898-33938021
Coord C2 exon
chr23:33941849-33941893
Length
124 bp
Sequences
Splice sites
3' ss Seq
AACACTCTTTGTTTCTCCAGGGA
3' ss Score
9.67
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
Exon sequences
Seq C1 exon
GCGGGATCCAGAATCCCATCAGCCAGTCTGTTTGTGGTGAATTTATACGGTCCAGCGCACACATTAGAGATGTTTCCTCCAGACTCCCAGAACAGCAG
Seq A exon
GGACAGCTACATCTCTATGGTGAGCTGGATCAGCAGCACCCGCCTGACAGTGCGCTGGTTGAACCGTGTCCAGAATCAGTCGGTTCTGTGCGTATGCGAGGCCACGACTGGAGCCTGTTCAGAG
Seq C2 exon
AGACACCAAATGGCGATGGACTTCTGGCACAACAACCAGCGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000104767-'1-4,'1-3,3-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0093016=DPPIV_N=FE(13.5=100)
A:
PF0093016=DPPIV_N=FE(17.3=100)
C2:
PF0093016=DPPIV_N=FE(5.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCAGAATCCCATCAGCCAGT
R:
CTGCCGCTGGTTGTTGTGC
Band lengths:
138-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]