MmuEX6026991 @ mm10
Exon Skipping
Gene
ENSMUSG00000036815 | Dpp10
Description
dipeptidylpeptidase 10 [Source:MGI Symbol;Acc:MGI:2442409]
Coordinates
chr1:123402833-123423710:-
Coord C1 exon
chr1:123423613-123423710
Coord A exon
chr1:123411711-123411834
Coord C2 exon
chr1:123402833-123402871
Length
124 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTGTTTCCAAACTAGAGA
3' ss Score
6.89
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
Exon sequences
Seq C1 exon
GCAGGTCAAGCGAACCCATCAGTGAAGTTATATGTTGTAAACCTGTATGGACCAACTCATACTTTGGAGCTGATGCCACCCGACATTTTTAAATCAAG
Seq A exon
AGAATATTACATCACCATGGTTAAATGGGTGAGCAACACGAGGACAGTGGTCAGGTGGTTGAATCGGCCTCAGAACATCTCCATCCTCACACTCTGTGAATCTACCACCGGGGCATGCAGCAGG
Seq C2 exon
AAATATGAGATGACGTCCGACACCTGGCTCTCTAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036815-'22-36,'22-33,24-36
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0093016=DPPIV_N=FE(8.7=100)
A:
PF0093016=DPPIV_N=FE(11.1=100)
C2:
PF0093016=DPPIV_N=FE(3.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGTCAAGCGAACCCATCAG
R:
TTAGAGAGCCAGGTGTCGGAC
Band lengths:
132-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types