GgaEX6043048 @ galGal3
Exon Skipping
Gene
ENSGALG00000012156 | DPP10
Description
NA
Coordinates
chr7:30817937-30823540:-
Coord C1 exon
chr7:30823443-30823540
Coord A exon
chr7:30819382-30819505
Coord C2 exon
chr7:30817937-30817975
Length
124 bp
Sequences
Splice sites
3' ss Seq
TGTTTTTATTGTCTGTTTAGGGA
3' ss Score
9.16
5' ss Seq
AGAGTAAGT
5' ss Score
9.35
Exon sequences
Seq C1 exon
GCAGGTCAAACAAACCCAACGGTAAAGCTGTCTGTAGTTAATCTGTATGGACCAGCACATACACTGGAACTGATGCCACCTGACAGCTTTAAATCAAG
Seq A exon
GGAATACTACATCACCATGGTGAAATGGGTAAGCAACACCAAGGCTGTGGTCAGATGGTTAAACAGACACCAGAATATCTCCATCCTTACAGTCTGTGAAACAACAACTGGAGCTTGCAGCAGA
Seq C2 exon
AAATATGAAATGCAATCAGATCTTTGGGTTCCTAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012156-'9-14,'9-12,10-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.015 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0093016=DPPIV_N=FE(8.7=100)
A:
PF0093016=DPPIV_N=FE(11.4=100)
C2:
PF0093016=DPPIV_N=FE(3.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGGTCAAACAAACCCAACG
R:
AGGAACCCAAAGATCTGATTGCA
Band lengths:
131-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]