BtaEX6012371 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000010050 | COL16A1
Description
collagen, type XVI, alpha 1 [Source:HGNC Symbol;Acc:HGNC:2193]
Coordinates
chr2:122569762-122570817:+
Coord C1 exon
chr2:122569762-122569797
Coord A exon
chr2:122570268-122570378
Coord C2 exon
chr2:122570782-122570817
Length
111 bp
Sequences
Splice sites
3' ss Seq
TGGTCTTTCCCTTCTGCTAGGGT
3' ss Score
9.15
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
Exon sequences
Seq C1 exon
GGCAAACCAGGGGTGCCCGGGCTGAAGGGAGAGAAG
Seq A exon
GGTGACCCCTGTGAAGTGTGCCCAACACTACCTGAAGGGTTCCAGAACTTTGTGGGGCTCCCTGGAAAGCCAGGACCCAAGGGAGAACCAGGTGATCCTGCACCAGCCAGG
Seq C2 exon
GAGAGTCTGGGAGCTGTTGGACAAAAAGGTGATCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010050-'26-33,'26-31,28-33=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(19.6=100)
A:
PF0139113=Collagen=PD(14.3=21.6),PF0139113=Collagen=PU(57.4=73.0)
C2:
PF0139113=Collagen=FE(18.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]