RnoEX6023539 @ rn6
Exon Skipping
Gene
ENSRNOG00000031475 | Col16a1
Description
collagen type XVI alpha 1 chain [Source:RGD Symbol;Acc:1310982]
Coordinates
chr5:148270583-148271846:+
Coord C1 exon
chr5:148270583-148270618
Coord A exon
chr5:148271084-148271194
Coord C2 exon
chr5:148271811-148271846
Length
111 bp
Sequences
Splice sites
3' ss Seq
TGGTTCTTGTCTTCTGCTAGGGT
3' ss Score
8.16
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
Exon sequences
Seq C1 exon
GGGAAGCCAGGAGTACCCGGGACTAAGGGAGAAAAG
Seq A exon
GGTGACCCCTGTGAAGTGTGTCCAACGCTGCCCGAAGGGTTCCAGAACTTTGTGGGGCTCCCTGGAAAGCCAGGGCCTAAAGGAGAACCAGGTGATCCTGCTCCAGCCAGG
Seq C2 exon
GGAGATCCAGGCATCCAAGGAATGAAAGGAGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000031475-'32-37,'32-35,33-37=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(19.6=100)
A:
PF0139113=Collagen=PD(14.3=21.6),PF0139113=Collagen=PU(49.1=70.3)
C2:
PF0139113=Collagen=FE(20.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]