MmuEX6096399 @ mm10
Exon Skipping
Gene
ENSMUSG00000040690 | Col16a1
Description
collagen, type XVI, alpha 1 [Source:MGI Symbol;Acc:MGI:1095396]
Coordinates
chr4:130060448-130061380:+
Coord C1 exon
chr4:130060448-130060483
Coord A exon
chr4:130060874-130060984
Coord C2 exon
chr4:130061345-130061380
Length
111 bp
Sequences
Splice sites
3' ss Seq
TGGTTCTTCTCTTCTGCTAGGGT
3' ss Score
8.24
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
Exon sequences
Seq C1 exon
GGGAAACCAGGAGTGCCAGGGACTAAGGGAGAGAAG
Seq A exon
GGTGACCCCTGTGAAGTGTGCCCAACGCTGCCTGAAGGGTCCCAGAATTTTGTGGGGCTCCCTGGAAAACCAGGGCCTAAAGGGGAACCAGGTGATCCTGCTCCAGCCTGG
Seq C2 exon
GAGGGCCTAGGAACTGTGGGACTGAAAGGTGACCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040690-'35-39,'35-37,36-39=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(19.6=100)
A:
PF0139113=Collagen=PD(14.3=21.6),PF0139113=Collagen=PU(41.3=70.3)
C2:
PF0139113=Collagen=FE(17.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types