HsaEX6029687 @ hg38
Exon Skipping
Gene
ENSG00000084636 | COL16A1
Description
collagen type XVI alpha 1 chain [Source:HGNC Symbol;Acc:HGNC:2193]
Coordinates
chr1:31689050-31690393:-
Coord C1 exon
chr1:31690367-31690393
Coord A exon
chr1:31689741-31689851
Coord C2 exon
chr1:31689050-31689085
Length
111 bp
Sequences
Splice sites
3' ss Seq
CTGCCTCTCCCTTCTGCTAGGGT
3' ss Score
10.43
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
Exon sequences
Seq C1 exon
GGGAAGCCAGGTGTGAAGGGAGAGAAG
Seq A exon
GGTGACCCCTGTGAAGTGTGCCCAACACTGCCTGAAGGGTTCCAGAACTTTGTTGGACTTCCTGGAAAGCCAGGGCCCAAAGGGGAGCCTGGTGATCCTGTACCAGCCAGG
Seq C2 exon
GGAGACCCTGGCATCCAAGGCATCAAAGGAGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000084636-'34-37,'34-33,35-37=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.978 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(14.0=100)
A:
PF0139113=Collagen=PD(21.1=32.4)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains