HsaEX6029687 @ hg19
Exon Skipping
Gene
ENSG00000084636 | COL16A1
Description
collagen, type XVI, alpha 1 [Source:HGNC Symbol;Acc:2193]
Coordinates
chr1:32154651-32155994:-
Coord C1 exon
chr1:32155968-32155994
Coord A exon
chr1:32155342-32155452
Coord C2 exon
chr1:32154651-32154686
Length
111 bp
Sequences
Splice sites
3' ss Seq
CTGCCTCTCCCTTCTGCTAGGGT
3' ss Score
10.43
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
Exon sequences
Seq C1 exon
GGGAAGCCAGGTGTGAAGGGAGAGAAG
Seq A exon
GGTGACCCCTGTGAAGTGTGCCCAACACTGCCTGAAGGGTTCCAGAACTTTGTTGGACTTCCTGGAAAGCCAGGGCCCAAAGGGGAGCCTGGTGATCCTGTACCAGCCAGG
Seq C2 exon
GGAGACCCTGGCATCCAAGGCATCAAAGGAGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000084636-'24-29,'24-25,25-29=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.973 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(14.0=100)
A:
PF0139113=Collagen=PD(21.1=32.4),PF0139113=Collagen=PU(60.4=78.4)
C2:
PF0139113=Collagen=FE(22.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)