BtaEX6029851 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012111 | PRDM5
Description
PR domain containing 5 [Source:HGNC Symbol;Acc:HGNC:9349]
Coordinates
chr6:4624015-4644910:+
Coord C1 exon
chr6:4624015-4624172
Coord A exon
chr6:4640780-4640873
Coord C2 exon
chr6:4644750-4644910
Length
94 bp
Sequences
Splice sites
3' ss Seq
AGGATGTCTTCCTTCTGCAGACC
3' ss Score
9.17
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
Exon sequences
Seq C1 exon
AAAAACGACCCTATAATTGTGAGATTTGTAATAAATCTTTCAAGAGGCTTGACCAAGTGGGTGCCCACAAAGTGATACACAGTGAAGATAAACCTTACAAGTGCAAGCTCTGTGGAAAGGGGTTTGCTCACAGAAATGTTTACAAGAATCACAAGAAG
Seq A exon
ACCCACTCGGAGGAGAGGCCATTCCAGTGCGAGGAGTGTAAAGCTCTCTTCCGGACTCCGTTTTCTTTGCAGAGACACCTGCTTATACATAACA
Seq C2 exon
GTGAGAGGACATTCAAGTGTCATCACTGTGATGCTACCTTTAAAAGAAAGGACACCTTGAATGTTCATGTCCAGGTGGTCCACGAAAGACACAAGAAGTACAGATGTGAGCTGTGTAATAAGGCATTTGTTACACCTTCAGTGCTTAGAAGTCATAAGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012111-'20-16,'20-14,21-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.038 A=0.000 C2=0.074
Domain overlap (PFAM):
C1:
PF144711=DUF4428=PD(2.0=1.9),PF134651=zf-H2C2_2=PD(57.7=28.3),PF121713=zf-C2H2_jaz=PU(84.0=39.6)
A:
PF121713=zf-C2H2_jaz=PD(8.0=6.2),PF134651=zf-H2C2_2=PU(38.5=31.2)
C2:
PF134651=zf-H2C2_2=PD(57.7=27.8),PF134651=zf-H2C2_2=WD(100=50.0),PF134651=zf-H2C2_2=PU(23.1=11.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGTGCCCACAAAGTGATACA
R:
GTGGACCACCTGGACATGAAC
Band lengths:
183-277
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]