GgaEX6035034 @ galGal4
Exon Skipping
Gene
ENSGALG00000011963 | PRDM5
Description
PR domain containing 5 [Source:HGNC Symbol;Acc:HGNC:9349]
Coordinates
chr4:53693535-53696536:+
Coord C1 exon
chr4:53693535-53693626
Coord A exon
chr4:53695094-53695187
Coord C2 exon
chr4:53696376-53696536
Length
94 bp
Sequences
Splice sites
3' ss Seq
ATGTTGTCTTTCATCTGCAGACC
3' ss Score
11.78
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
Exon sequences
Seq C1 exon
AACAGGTACAGCACAGACATCAGCACTGCGAGCTTCCCCACAGTGTCTCGTCAATATGTCTCAACCCTGTTCTGGAGGAACCACCTGTTGAG
Seq A exon
ACCCATTCTGAAGAGAGACCATTCCAATGTGAGGAATGCAAAGCTTTGTTCCGAACCCCATTCTCTCTACAAAGACATCTACTAATTCATAACA
Seq C2 exon
GTGAGAGGACCTTCAAGTGTGATCACTGTGATGCTACTTTCAAAAGAAAAGACACCTTAAACGTTCATATTCAAGTTGTACATGATGGACATAAGAAATATAAGTGTGATCTCTGTGACAAAGCTTTTGTGACACCCTCAGTCCTGAAAAGTCATAAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011963-'13-15,'13-14,15-15=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.075 A=0.000 C2=0.046
Domain overlap (PFAM):
C1:
PF121713=zf-C2H2_jaz=PD(21.2=22.6),PF134651=zf-H2C2_2=PU(4.8=3.2)
A:
PF134651=zf-H2C2_2=PD(85.7=56.2),PF134651=zf-H2C2_2=PU(38.5=31.2)
C2:
PF134651=zf-H2C2_2=PD(57.7=27.8),PF134651=zf-H2C2_2=WD(100=50.0),PF134651=zf-H2C2_2=PU(23.1=11.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCAACCCTGTTCTGGAGGA
R:
TCAGGACTGAGGGTGTCACAA
Band lengths:
181-275
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]