RnoEX0069368 @ rn6
Exon Skipping
Gene
ENSRNOG00000023679 | Prdm5
Description
PR/SET domain 5 [Source:RGD Symbol;Acc:1588700]
Coordinates
chr4:96716448-96812263:+
Coord C1 exon
chr4:96716448-96716570
Coord A exon
chr4:96762506-96762599
Coord C2 exon
chr4:96810025-96812263
Length
94 bp
Sequences
Splice sites
3' ss Seq
TCAGTATCTTTCCTCTGCAGACT
3' ss Score
9.5
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
Exon sequences
Seq C1 exon
GTGCGTGGGAGCAAGGGAGAAGTTCTGTATATTTTGGATGCTACCAACCCGAGACACTCCAACTGGCTTCGCTTTGTACATGAGGCACCATCTCAGGAGCGGAAGAATCTGGCTGCAATTCAA
Seq A exon
ACTCACTCGGAGGAGAGGCCCTTCCAGTGTGACGAATGTAAAGCCTTGTTCCGCACCCCCTTTTCTCTGCAAAGACACCTGTTAATCCACAACA
Seq C2 exon
GAGAAGCCCTACCAGTGCTCAGAGTGCAGCAAGGCCTTCAGCCAGAAGCGGGGCCTCGATGAGCACAAGAGGACGCACACAGGAGAAAAGCCTTTTCAGTGTGACGTGAGTTGGGTTCTTTTTTTCTTCCCTGGTATTCTGTGGTAAGCGCTGGGGATGTCTTGCTGCACATGCGTTTGATTTGTGTGTCTGTCAGTGCCTTGTGCTGCCCCATCTCTGGGTTGCATACTCTTTGCATTCATATTCTATTCATTATGGTTTCCTAGCAGCAAATAAATTGTGATTTCCTTCAGGATATCTTCCAGTATCTAATTCCATGGAGCTGTTCTTCCAGGGTGTAAATTTGGGAGAGTTTGAGGCAATTCAGTTAGGCCCAAGTCTTTGACAAGTTAGTGACAGCTGAACCAATAGGATGAATATGACTAAAATATAATGTATGTGTGCCAGAAGTTCTTTTTAAAATTAGAATATAAAACTATATTTAGCAAATCATAGATGTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000023679_MULTIEX1-7/10=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.195 A=0.000 C2=0.083
Domain overlap (PFAM):
C1:
NO
A:
PF121713=zf-C2H2_jaz=PD(8.0=6.2),PF134651=zf-H2C2_2=PU(38.5=31.2)
C2:
PF134651=zf-H2C2_2=PD(53.8=28.6),PF134651=zf-H2C2_2=WD(100=38.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGCTTTGTACATGAGGCACC
R:
AACCCAACTCACGTCACACTG
Band lengths:
172-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]