GgaEX6035034 @ galGal3
Exon Skipping
Gene
ENSGALG00000011963 | PRDM5
Description
NA
Coordinates
chr4:55814599-55823273:+
Coord C1 exon
chr4:55814599-55814756
Coord A exon
chr4:55821831-55821924
Coord C2 exon
chr4:55823113-55823273
Length
94 bp
Sequences
Splice sites
3' ss Seq
ATGTTGTCTTTCATCTGCAGACC
3' ss Score
11.78
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
Exon sequences
Seq C1 exon
AAAAACGCCCCTACACCTGCGAGGTTTGCAATAAGTCCTTCAAACGACTTGATCAAGTGACTGCACACAAAATAATACACAGTGAAGATAAACCTTATAAATGCAAGCTTTGTGGAAAGGGATTTGCCCACAGAAATGTTTACAAGAATCACAAGAAG
Seq A exon
ACCCATTCTGAAGAGAGACCATTCCAATGTGAGGAATGCAAAGCTTTGTTCCGAACCCCATTCTCTCTACAAAGACATCTACTAATTCATAACA
Seq C2 exon
GTGAGAGGACCTTCAAGTGTGATCACTGTGATGCTACTTTCAAAAGAAAAGACACCTTAAACGTTCATATTCAAGTTGTACATGATGGACATAAGAAATATAAGTGTGATCTCTGTGACAAAGCTTTTGTGACACCCTCAGTCCTGAAAAGTCATAAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011963-'11-13,'11-12,13-13=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.019 A=0.000 C2=0.056
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=PD(57.7=28.3),PF121713=zf-C2H2_jaz=PU(84.0=39.6)
A:
PF121713=zf-C2H2_jaz=PD(8.0=6.2),PF134651=zf-H2C2_2=PU(38.5=31.2)
C2:
PF134651=zf-H2C2_2=PD(57.7=27.8),PF134651=zf-H2C2_2=WD(100=50.0),PF134651=zf-H2C2_2=PU(23.1=11.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAAGCTTTGTGGAAAGGGA
R:
AGCTTTGTCACAGAGATCACACT
Band lengths:
182-276
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]