BtaEX6046210 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000006948 | GARNL3
Description
GTPase activating Rap/RanGAP domain-like 3 [Source:HGNC Symbol;Acc:HGNC:25425]
Coordinates
chr11:98028447-98071212:+
Coord C1 exon
chr11:98028447-98028516
Coord A exon
chr11:98057486-98057560
Coord C2 exon
chr11:98071113-98071212
Length
75 bp
Sequences
Splice sites
3' ss Seq
AGTCCTCTTTTGTTCCCCAGCTT
3' ss Score
7.25
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
Exon sequences
Seq C1 exon
CTCTGTCTCGGAAGACCTAGGCTGTAGACGTGGGGATTTCAGTAGGAAACATTATGGATCTGTGGAGCTG
Seq A exon
CTTATTTCCAGTGATGCCGATGGAGCCATCCAAAGGGCCGGAAGGTTTCGAGTGGAAAACGGCTCTTCAGATGAG
Seq C2 exon
AACGCAACTGCTCTGCCAGGTACTTGGCGAAGGACAGACGTGCACTTAGAGAACCCAGAATACCACACCAGATGGTATTTCAAGTATTTTTTAGGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006948-'7-3,'7-2,9-3=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.400 C2=0.235
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTCGGAAGACCTAGGCTGT
R:
CCATCTGGTGTGGTATTCTGGG
Band lengths:
141-216
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]