MmuEX0020078 @ mm10
Exon Skipping
Gene
ENSMUSG00000038860 | Garnl3
Description
GTPase activating RANGAP domain-like 3 [Source:MGI Symbol;Acc:MGI:2139309]
Coordinates
chr2:33054158-33105023:-
Coord C1 exon
chr2:33104853-33105023
Coord A exon
chr2:33064004-33064078
Coord C2 exon
chr2:33054158-33054257
Length
75 bp
Sequences
Splice sites
3' ss Seq
TACATGTTTTTCCCCCCCAGCTC
3' ss Score
9.23
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
Exon sequences
Seq C1 exon
CACAGCACCTCAGCCTCCAGGCCCACTGATGGATCCACTGACCAAGGGGTCCTGTGGGAGTCAGCTGGCACAAACCCTCCTCTGGAAAGCGAAGTCATCTCTCTCTTTCGGCATCCAGCCCCTTCAGACTTGGCCAACAAAAGATCCTGAACTAGAGTCCCAGGTCAACCT
Seq A exon
CTCATCTCTAGTGATGCCGATGGAGCCATCCAAAGGGCAGGAAGATTCCGAGTGGAGAATGGCTCTACAGATGAG
Seq C2 exon
AGTGCAGCTGCTCTGCCAGGCACTTGGCGAAGGACAGACGTGCACTTAGAAAACCCGGAGTACCACACCCGGTGGTATTTCAAGTACTTTTTAGGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038860_MULTIEX3-2/5=C1-4
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.242 A=0.330 C2=0.135
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAACCCTCCTCTGGAAAGCG
R:
GGTGTGGTACTCCGGGTTTTC
Band lengths:
170-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types