RnoEX0037760 @ rn6
Exon Skipping
Gene
ENSRNOG00000057044 | Garnl3
Description
GTPase activating Rap/RanGAP domain-like 3 [Source:RGD Symbol;Acc:1564019]
Coordinates
chr3:12105115-12136964:-
Coord C1 exon
chr3:12136894-12136964
Coord A exon
chr3:12115159-12115233
Coord C2 exon
chr3:12105115-12105214
Length
75 bp
Sequences
Splice sites
3' ss Seq
GAATGTTCTTTTCCTCCTAGCTC
3' ss Score
6.74
5' ss Seq
GAGGTAGGG
5' ss Score
7.81
Exon sequences
Seq C1 exon
CTCTGTGCTCAGAAGACCTAGGCTGTAGACGTGGGGATTTCAGTAGGAAACATTATGGATCTGTGGAGCTG
Seq A exon
CTCATCTCTAGTGATGCAGATGGAGCCATCCAAAGAGCAGGAAGATTCCGAGTGGAAAATGGCTCTACAGATGAG
Seq C2 exon
AACGCAGCTGCTCTGCCAGGCACTTGGCGAAGGACAGACGTGCACTTAGAAAACCCAGAGTACCACACCCGGTGGTATTTCAAGTACTTTTTAGGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000057044-'6-13,'6-10,9-13
Average complexity
C1
Mappability confidence:
92%=83=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.320 C2=0.191
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
ENSRNOT00000082696fB5860
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTGCTCAGAAGACCTAGGC
R:
AAAGTACTTGAAATACCACCGGG
Band lengths:
159-234
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]