GgaEX1026105 @ galGal4
Exon Skipping
Gene
ENSGALG00000000847 | GARNL3
Description
GTPase-activating Rap/Ran-GAP domain-like protein 3 [Source:RefSeq peptide;Acc:NP_001025847]
Coordinates
chr17:10414670-10417722:+
Coord C1 exon
chr17:10414670-10414739
Coord A exon
chr17:10416195-10416269
Coord C2 exon
chr17:10417623-10417722
Length
75 bp
Sequences
Splice sites
3' ss Seq
TATCTTAAACTCTCTCATAGCTT
3' ss Score
6.21
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
Exon sequences
Seq C1 exon
CTCAGTCTCTGAAGATCTTGGTTGCAGACGTGGAGAGTTTAGCAGGAAGCACTATGGATCTGTGGAGCTT
Seq A exon
CTTATATCTAGTGATGCTGATGGAGCTATTCAAAGAGCTGGACGATTCCGAGTGGAAAATGGCTCTTCTGATGAG
Seq C2 exon
AATACAGGCTACACTCCAGGTACATGGCACAGGACGGATGTACATTTGGAAAATCCAGAGTATTATACAAGATGGTATTTCAAATATTTTTTAGGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000847-'5-12,'5-9,7-12
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.222 C2=0.216
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
ENSGALT00000001243fB85
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGTCTCTGAAGATCTTGGTTGC
R:
TCCAAATGTACATCCGTCCTGTG
Band lengths:
119-194
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]