MmuEX0020078 @ mm9
Exon Skipping
Gene
ENSMUSG00000038860 | Garnl3
Description
GTPase activating RANGAP domain-like 3 [Source:MGI Symbol;Acc:MGI:2139309]
Coordinates
chr2:32909678-32941464:-
Coord C1 exon
chr2:32941395-32941464
Coord A exon
chr2:32919524-32919598
Coord C2 exon
chr2:32909678-32909777
Length
75 bp
Sequences
Splice sites
3' ss Seq
TACATGTTTTTCCCCCCCAGCTC
3' ss Score
9.23
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
Exon sequences
Seq C1 exon
CTCTGTCTCAGAAGACCTAGGCTGTAGACGTGGGGATTTCAGTAGGAAGCATTATGGATCTGTGGAGCTG
Seq A exon
CTCATCTCTAGTGATGCCGATGGAGCCATCCAAAGGGCAGGAAGATTCCGAGTGGAGAATGGCTCTACAGATGAG
Seq C2 exon
AGTGCAGCTGCTCTGCCAGGCACTTGGCGAAGGACAGACGTGCACTTAGAAAACCCGGAGTACCACACCCGGTGGTATTTCAAGTACTTTTTAGGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038860-'10-12,'10-11,11-12
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.019 A=0.326 C2=0.158
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTCAGAAGACCTAGGCTGT
R:
TAAAAAGTACTTGAAATACCACCGGG
Band lengths:
159-234
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: