GgaEX1026105 @ galGal3
Exon Skipping
Gene
ENSGALG00000000847 | GARNL3
Description
NA
Coordinates
chr17:11145213-11148265:+
Coord C1 exon
chr17:11145213-11145282
Coord A exon
chr17:11146738-11146812
Coord C2 exon
chr17:11148166-11148265
Length
75 bp
Sequences
Splice sites
3' ss Seq
TATCTTAAACTCTCTCATAGCTT
3' ss Score
6.21
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
Exon sequences
Seq C1 exon
CTCAGTCTCTGAAGATCTTGGTTGCAGACGTGGAGAGTTTAGCAGGAAGCACTATGGATCTGTGGAGCTT
Seq A exon
CTTATATCTAGTGATGCTGATGGAGCTATTCAAAGAGCTGGACGATTCCGAGTGGAAAATGGCTCTTCTGATGAG
Seq C2 exon
AATACAGGCTACACTCCAGGTACATGGCACAGGACGGATGTACATTTGGAAAATCCAGAGTATTATACAAGATGGTATTTCAAATATTTTTTAGGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000847-'5-7,'5-5,7-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.280 C2=0.265
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGTCTCTGAAGATCTTGGTTGC
R:
TCCAAATGTACATCCGTCCTGTG
Band lengths:
119-194
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]