HsaEX0027040 @ hg19
Exon Skipping
Gene
ENSG00000136895 | GARNL3
Description
GTPase activating Rap/RanGAP domain-like 3 [Source:HGNC Symbol;Acc:25425]
Coordinates
chr9:130026805-130074014:+
Coord C1 exon
chr9:130026805-130027300
Coord A exon
chr9:130053447-130053521
Coord C2 exon
chr9:130073915-130074014
Length
75 bp
Sequences
Splice sites
3' ss Seq
GAATGCTTTTTCCCCCCTAGCTT
3' ss Score
7.76
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
Exon sequences
Seq C1 exon
ATATTTGGGACAAAGAGCTCTCTTAAATGAAAGATAATTGCAAGATCCGGTTCAGCAGCTTTGTCCCTTGCCTCAAGTTTACTGCAGGGCTTCTCTCCTCTCTGGTTATACAGAAATGAAATTATAAACCACCAGTAACCTTGGAAATTTCAATCGATTCCAAATGACTAAATATTTAATTGAATCATTGCCTATACTTCCAGGGATGACTCTGGCGTTTGCTTTTTATTGAGGGCTCCATGAAAGCCAGGCTCTGCAATGGCTGCTGGGGACTGTGTCTGTTGCAAGGAGGCTCCCCTGCAGTGAGGAGCCGGGGCACTGCAAGTCTGTTCCATAGCAGCCCTTTTTGCAAATGGTAGTTGATTTTTGCAGAAGGTTTGTGGCCAGATCGCTATGTATAATACTGATGAAGCATTTTTGTTCCAGCTCTGTCTCGGAAGACCTAGGCTGTAGACGTGGGGATTTCAGTAGGAAACATTATGGATCTGTGGAGCTG
Seq A exon
CTTATTTCCAGTGATGCTGATGGAGCCATCCAAAGGGCTGGAAGATTCAGAGTGGAAAATGGCTCTTCAGATGAG
Seq C2 exon
AATGCAACTGCCCTGCCTGGTACTTGGCGAAGAACAGACGTGCACTTAGAGAACCCAGAATACCACACCAGATGGTATTTCAAATATTTTTTAGGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136895_MULTIEX1-2/12=1-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.229 C2=0.172
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGAAGGTTTGTGGCCAGAT
R:
CACGTCTGTTCTTCGCCAAGT
Band lengths:
170-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)