BtaEX6053987 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016800 | SEMA6D
Description
sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D [Source:HGNC Symbol;Acc:HGNC:16770]
Coordinates
chr10:62877209-62878502:-
Coord C1 exon
chr10:62878339-62878502
Coord A exon
chr10:62877834-62877945
Coord C2 exon
chr10:62877209-62877269
Length
112 bp
Sequences
Splice sites
3' ss Seq
TAGCCCGTTTTTACTTGCAGATT
3' ss Score
8.59
5' ss Seq
CAGGTAATT
5' ss Score
8.55
Exon sequences
Seq C1 exon
GTAGCTAAGTGGACTCTCTGAGGAGGGGCTGCTCTGCCTTCACGTTGGCCCAACCATGAGGTTCTTCCTGCTCTGTGCCTACATGCTGCTGCTACTGATTTCCCAGTTGAGGGCAGTCAGCTTTCCTGAAGATGATGAACCCCTTAATACTGTTGACTATCACT
Seq A exon
ATTCAAGGCAATATCCGGTTTTTAGAGGACGTCCTTCAGGCAATGAATCACAGCACAGGCTGGACTTTCAGCTGATGTTGAAAATTCGAGACACACTTTATATTGCTGGCAG
Seq C2 exon
GGATCAAGTTTATACAGTAAACTTAAATGAAATCCCCAAAACAGAAGTAATACCAAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016800-'8-3,'8-2,9-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0140314=Sema=PU(3.8=42.1)
C2:
PF0140314=Sema=FE(4.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAAGTGGACTCTCTGAGGAGGG
R:
TGTTTGGTATTACTTCTGTTTTGGGG
Band lengths:
218-330
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]