RnoEX0079405 @ rn6
Exon Skipping
Gene
ENSRNOG00000004812 | Sema6d
Description
semaphorin 6D [Source:RGD Symbol;Acc:1310910]
Coordinates
chr3:116943294-116944855:+
Coord C1 exon
chr3:116943294-116943454
Coord A exon
chr3:116944138-116944249
Coord C2 exon
chr3:116944795-116944855
Length
112 bp
Sequences
Splice sites
3' ss Seq
TAGCCCATTTTCACTTGCAGATT
3' ss Score
8.62
5' ss Seq
CAGGTAATT
5' ss Score
8.55
Exon sequences
Seq C1 exon
GAAGCTAAGTGGGACTTCTGAGGAGGGAGCTCAGATACCTTCTCGGCCAACCATGAGGTTCTTTCTGCTGTGGTTCTGTGTGCTGTTCCTTCTGGTCTCCAGGTTACGGGCCGTCAGCTTCCCTGAGGACGATGAGCCCCTTAACACGGTTGACTACCACT
Seq A exon
ATTCAAGGCAATATCCGGTTTTTAGAGGACGCCCTTCAGGCAACGAATCGCAGCATAGGCTGGACTTTCAGCTGATGTTGAAAATTCGAGACACACTTTATATTGCTGGCAG
Seq C2 exon
GGATCAAGTCTATACAGTGAACTTAAATGACATCCCCCAAACAGAGGTGATCCCGAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004812-'15-9,'15-8,16-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0140314=Sema=PU(4.0=42.1)
C2:
PF0140314=Sema=FE(5.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTAAGTGGGACTTCTGAGGA
R:
TGCTCGGGATCACCTCTGTTT
Band lengths:
218-330
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]