GgaEX1051719 @ galGal4
Exon Skipping
Gene
ENSGALG00000004844 | SEMA6D
Description
sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D [Source:HGNC Symbol;Acc:HGNC:16770]
Coordinates
chr10:9404673-9405920:+
Coord C1 exon
chr10:9404673-9404781
Coord A exon
chr10:9405163-9405274
Coord C2 exon
chr10:9405860-9405920
Length
112 bp
Sequences
Splice sites
3' ss Seq
TAGCCCACTTTTACTTGCAGATT
3' ss Score
6.9
5' ss Seq
CAGGTAATT
5' ss Score
8.55
Exon sequences
Seq C1 exon
ATGAGGCTTCCTCTGCTGTGCGCCTCTGTGATGCTAATGAGTCTGTCCCAGTGCCGAGCTGTCAGCTTTCCTGAAGATGAGGACCCTATTAACATTGTTGACTACCACT
Seq A exon
ATTCAAGGCAATATCCAGTATTTAGAGGACGCCCTTCAGGCAATGAATCTCAGCACAGACTGGACTTCCAACTGATGCTGAAAATTCGAGACACACTTTATATCGCTGGCAG
Seq C2 exon
GGATCAAGTTTACACTGTAAACTTAAATGAAGTTCCAAAATCAGAAGTTACTCCAAGCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004844-'1-5,'1-3,2-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.053 C2=0.095
Domain overlap (PFAM):
C1:
NO
A:
PF0140314=Sema=PU(3.7=42.1)
C2:
PF0140314=Sema=FE(4.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGCTTCCTCTGCTGTGC
R:
CCTGCTTGGAGTAACTTCTGA
Band lengths:
168-280
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]