BtaEX6093436 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000009155 | SCN5A
Description
Bos taurus sodium channel, voltage-gated, type V, alpha subunit (SCN5A), mRNA. [Source:RefSeq mRNA;Acc:NM_174458]
Coordinates
chr22:12028932-12035359:-
Coord C1 exon
chr22:12035186-12035359
Coord A exon
chr22:12031290-12031412
Coord C2 exon
chr22:12028932-12029213
Length
123 bp
Sequences
Splice sites
3' ss Seq
CACCGCCCTGTCTCCCACAGGTC
3' ss Score
12.92
5' ss Seq
AGGGTAAGA
5' ss Score
9.21
Exon sequences
Seq C1 exon
GCCTTTGAGGACATCTACCTGGAGGAACGGAAGACCATCAAGGTCCTGCTGGAGTACGCCGACAAGATGTTCACCTACGTCTTCGTGCTGGAGATGCTCCTCAAGTGGGTGGCCTACGGCTTCAAGAAGTACTTCACCAACGCCTGGTGCTGGCTTGATTTCCTCATCGTGGAC
Seq A exon
GTCTCGCTGATCAGCCTGGTGGCCAACGCCCTGGGCTTTGCTGAGATGGGCCCCATCAAGTCACTGCGGACCTTGCGTGCGCTCAGACCCCTGCGAGCCCTGTCACGATTTGAGGGCATGAGG
Seq C2 exon
GTTGTGGTTAACGCCCTGGTGGGCGCCATCCCATCCATCATGAACGTCCTCCTCGTCTGCCTCATCTTCTGGCTCATCTTCAGCATCATGGGCGTGAACCTCTTCGCGGGGAAGTTTGGGAGATGCATCAACCAGACCGAGGGAGACCTGCCCTTGAACTATACCATCGTGAACAACAAGAGCGACTGTGAGTCTTTCAACGTGACTGGCGAATTGTACTGGACCAAGGTGAAGGTCAACTTTGACAACGTGGGGGCCGGGTACCTGGCCCTTCTGCAGGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009155-'24-28,'24-27,25-28=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=PU(17.0=67.2)
A:
PF0052026=Ion_trans=FE(17.5=100)
C2:
PF0052026=Ion_trans=FE(40.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TACCTGGAGGAACGGAAGACC
R:
ACGCCCATGATGCTGAAGATG
Band lengths:
254-377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]