RnoEX6038200 @ rn6
Exon Skipping
Gene
ENSRNOG00000015049 | Scn5a
Description
sodium voltage-gated channel alpha subunit 5 [Source:RGD Symbol;Acc:3637]
Coordinates
chr8:128180755-128186533:-
Coord C1 exon
chr8:128186360-128186533
Coord A exon
chr8:128183979-128184101
Coord C2 exon
chr8:128180755-128181036
Length
123 bp
Sequences
Splice sites
3' ss Seq
CGCTCATCCCTTCTCCATAGGTC
3' ss Score
11.79
5' ss Seq
CGGGTGAGT
5' ss Score
9.89
Exon sequences
Seq C1 exon
GCCTTCGAGGACATCTACCTGGAGGAGCGGAAGACCATCAAGGTTCTGCTGGAGTACGCGGACAAGATGTTCACCTACGTCTTTGTGTTGGAGATGCTGCTCAAGTGGGTGGCCTACGGCTTCAAGAAGTACTTCACCAACGCCTGGTGCTGGCTGGACTTCCTGATTGTGGAC
Seq A exon
GTCTCGCTGGTCAGCCTCGTGGCAAACACCTTAGGCTTCGCCGAAATGGGTCCCATCAAGTCACTGAGGACACTGCGTGCACTTCGACCCCTGAGGGCCTTGTCGAGATTTGAGGGCATGCGG
Seq C2 exon
GTGGTGGTCAATGCGCTGGTGGGCGCCATCCCCTCCATCATGAACGTCCTCCTCGTCTGCCTCATCTTCTGGCTCATCTTCAGCATCATGGGTGTGAACCTCTTCGCCGGGAAGTTCGGTAGGTGCATCAACCAGACAGAAGGGGACCTGCCTCTGAACTACACCATCGTGAACAACAAGAGTGAGTGCGAGTCCTTCAACGTGACCGGAGAGTTGTACTGGACCAAGGTGAAGGTCAACTTTGACAACGTGGGAGCCGGGTACCTGGCCCTCCTGCAGGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015049-'31-33,'31-32,32-33=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=PU(17.0=67.2)
A:
PF0052026=Ion_trans=FE(17.5=100)
C2:
PF0052026=Ion_trans=FE(40.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTGGACTTCCTGATTGTGG
R:
TGGTCCAGTACAACTCTCCGG
Band lengths:
249-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]