GgaEX1051184 @ galGal4
Exon Skipping
Gene
ENSGALG00000006112 | SCN5A
Description
sodium channel, voltage gated, type V alpha subunit [Source:HGNC Symbol;Acc:HGNC:10593]
Coordinates
chr2:5578251-5597640:+
Coord C1 exon
chr2:5578251-5578424
Coord A exon
chr2:5591483-5591605
Coord C2 exon
chr2:5597359-5597640
Length
123 bp
Sequences
Splice sites
3' ss Seq
TGCTTTGTATCTTCATCCAGGTC
3' ss Score
10.23
5' ss Seq
AGGGTAAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
GCTTTTGAAGATATTTACCTTGAAGATCGAAAAAACATAAAAACCATGCTGGAATATGCTGACAAAATATTCACTTACATCTTTGTATTGGAAATGCTCCTGAAATGGGTGGCTTATGGCTTCAAGAAGTATTTCACCAACGCCTGGTGCTGGCTTGACTTCCTCATTGTCGAT
Seq A exon
GTCTCCTTAATCAGCCTCATAGCCAACACTCTTGGATACTCCGAGATGGGTCCCATTAAATCCCTCAGGACCCTCCGAGCTCTGAGACCACTGAGAGCGTTGTCACGGTTTGAAGGGATGAGG
Seq C2 exon
GTGGTGGTCAATGCCCTTGTGGGAGCCATCCCTTCCATCATGAACGTTCTGCTCGTCTGCCTCATCTTCTGGCTCATCTTTAGCATCATGGGAGTCAACCTGTTTGCTGGGAAGTTTGGGAAGTGCATTAATAAGACAGAAGGAGATATGCCTTTAGACTCTAAAATTATTAACAACATGACTGACTGCATACTCTATAATGTTTCTGGCACATTTTACTGGACAAAAGTTAAAGTTAACTTTGACAACGTTGGCGCTGGGTACCTGGCTCTCCTGCAGGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006112_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=PU(17.0=67.2)
A:
PF0052026=Ion_trans=FE(17.5=100)
C2:
PF0052026=Ion_trans=FE(40.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ACCATGCTGGAATATGCTGACA
R:
CACTTCCCAAACTTCCCAGCA
Band lengths:
257-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]