BtaINT0152515 @ bosTau6
Intron Retention
Gene
ENSBTAG00000015321 | TRERF1
Description
transcriptional regulating factor 1 [Source:HGNC Symbol;Acc:HGNC:18273]
Coordinates
chr23:15966737-15974824:-
Coord C1 exon
chr23:15974749-15974824
Coord A exon
chr23:15966826-15974748
Coord C2 exon
chr23:15966737-15966825
Length
7923 bp
Sequences
Splice sites
5' ss Seq
CCGGTAGGT
5' ss Score
9.39
3' ss Seq
AAGTTTGTGTTTTGTTGTAGGTT
3' ss Score
8.91
Exon sequences
Seq C1 exon
GCTGCTCTGGAAATGCTGCTGTTGCGGAAACCAGTCAGGTTAAAATGTCATCCTTTAGCAAATTACCACTATGCCG
Seq A exon
GTAGGTGCCGGGGCCCTGCCGGGGCTCACTGTTTGCATGTCGCTCGTGTCCCCTTTACTAGAGCACCTGTTCTCTCCTCGGTGCCGCTTGTTTTCCCTGGGCCTCTGGGGCGTGGCCAGTGGGGCAGCTGTGTCCACCGACTGGTCGCTGTTGGGCATTTGTCTGTCTCCTCCCTTCCTGGGTGTGCTAAGAGCTGGGCAGCAGCGGCCAGGGGCCCCTCGTATGGCAGGGGAGAGAGCCCCAGAGGGTAGCACAGAGGCAACAACTCGCAGTGGCCCCTCGGCTTTGGAATCCAGTCTTGCCTGCTCCCCGTGGCCCTCTGCGGCTTTGGTTTCCTCACCTGTAAAGTGGGGCTCATAGTCCATCCCTTATGGCATTTTGTGAAGACTAGAGAGCATATGGAGCCTCTTGCCTGGAACATTCTAGTAGCCATTATTATTCATTTATTGAACAATTTAAGATGAGGAAGTGACAGTGACGGATTTTGACACGGTCTTGCCTTATGCAGTTTGGAGTCTGAGGAGGAGGCAGTTATTAAACAACAGGTCACACAAATGGCAGGAGAAAGACATGTATGTATACCTGTACCTATACGTATACACATGGGGCTTCCCAGGTGGCGCTAGTGGTAAAGAATCCACCTGCCAATGCAGGCACGAGAGACTCGAGTTCGATCCCTGGGTCGGGAAGATCCCCTGGAGTAGGAAATGGCAGTCCCCTCCAGTGTTCTTTCCTGGAGAATTCCATGGACAGAGGAGCCTGGTGGACTACCATCCATGTGGTTGCAAAGAGCCGAACACTACTGAGCACACACACACGAACATATACACTTACATGTACTTGTACGCATAGATACACACATACACACGCATGTACACTGTCTTAGAAGCCGGTGGATTAATGATGGCATCACCAATAAGAGGGAAGGAGCACACACCTTAGAGAGTTGAATGTGGTGAGAATGGTGAAAAGACAAGGAAACAGGTTGGGGAGCCTGTGGTGACAAGTGAAGTCGAAGTCAGCGTCTGTATTCTGTTAAGCGGTAGCCCTATCTGTTCTGGCGTCTCCACAAGCCTGCCCAGGTTCTCTCTTTCCGAGAGGGCTGGATCCTCCAGTGCCCCTTGGTGGTATTCGTTTGAAGGTGTCTCTGGTGCCTGGGGGGACCCTGCACAGTAGGTGCTGACTACCTCAGTGGCCTTCGGGACCCAGTGGTGCCTTTTCCAGGCCTTGGTCCAGGTGGCCAAATGTGGCCTCAGGGGAGGGCTGTTCTGCAGGTACCACGGTGCTCTTAGACGGCTCCCTGTCCCCACCTCCACTGTCTGCCTCAAGGAGCCAGTTTCTTAATATTGTCTCCATCATTTCCTGCTCGGTGTCTTCCCTGAGTGTGGCTAGAAGATGTGGGAGTTCTCCCTAATCTGCTGTGGAAACAATTCAATCCTCTCTTAATTCCCAGCGTCATCTGCTACCCATTAAACCCTGACAGGCCGTCCAGCCTCCTGGAGCCTGTGTCAAGCTTCTTTGCTCAGTGGGTGAGACTTCCCAACCATCTGCCGCGGCTGCCCTCCGCCCCCAGGGTGACTGGGGTGGCCAGCGCCTCGGGGTGGGTCAGCTCCAGCAATGAGCAACCTCTTCTGGAACCTAAATCCCCTCTGGTTCTTTCCCGCATGCCAAGCAACAATTGTGATTTTTTTTTCTTTAATGTGTGTCATGACGTGAAAAAGATGGGAAAACTGTGGGCTGGAAGCTACCCCCACCCTAAACAAGAAAAAAACATTGAAATAGGACTAAAAACTTTGATTCCCAGGTGACTCAGTGGTAAAGAATCTGCCTGCCAAGCAGGAGACACAGGAGACGCGAGTTCAGTCCCTGGATTGGGAAGATCCCCTGGAGGAGGAAATGGCAACCCACTCCAGTATTCTTGCCTGGAGGCTATACAGTCCATGGGGTCGCAGAGAGTCGGACACAACTGGAAGGGCTGAACTCCAGACTCCCAGTTGTCTAGAGAGAGGTCAGACCTCCCTGGCTTGTGCCCTGGAAGGAAGGTGGAAAGACTGGGTTCGGGGGGAGACTAAATTTGGGGGAGACAGGGGCCCTTGAAAATCACTTCTCTGACTTTACTCCTGACTGCCCTTCCACCCCATCCCACCCCAAGCAGTTCAGAAAGAAAAGGGAAGAACGGCCAGTTCTGGAGCCCAGAAGAGACGCTGGTGTGGGTGGGCTGCTCGGCAAACCTGGAGGAGCTCTGTTAGAATCCTCAGAGGGTGGCGCTGTTGCTGTGGCCTTCAGGGCTCTCAAACTGACACCAAAGCGCCTGGTCCAGCTTTCTCTCCGCACCCTCCACCCATGTGTGGGCAGCTGTTGTTTGCAGTGGCTCCCAGTCAGCGGCTGGATTGGGTGGAGAAGGCTTAAGCATGGGGATGTCGAGGGGGCGAGGATGCCTGGCTGTGATTAGAGGACTTCAGCATCCTTGGTTTTTCGCTGAGCTGGTCATTCCTGCAGATGGGTGCAGAGTGGAGGGGCGTCAGAGCTGGCCCTGGGACTCTTGGCAAGAGTTCAGCAGAGGCTCGTATGGGCGCCCCCACAGCCCAAGTTCTCAAGGGGTCCTGAACCTTGACCTGACTCCAGAGATGGGAGAGACCTGGAGGAAATACCCATTCAGGCGGAGGAGGCTGGTCTACGTCTTGGAAGTTGCCCCAGTTTGGTGGGGAAACAGAATTACATGCTCCAGAGAATACTTTGAAAGAACCACAGCTGTGAAGTCACCTCGCAGGCATTCTTAGCCCATGTTGCTAGCTGGAGACTGACCCCCGCAAAGGCCAGGAACCAAGTTACTATGCACTTTGCTGCTTGGCCTGACACGGCGCTTAGAGAGAAGAAGGTTAGTGGACAAGCTCAGGTTCTGGATTCAGACCAAGGCCTCCTTGCCTTTTGCCTCCAGAGGGAACTTTGGTATCACCCAGTTCACATGCACCCCTAAAAAAATTACTCAGCCTTCACCCATCATGGAAAATCTTTCACTAAATGAAGATCTGGTATAAAAACAAGTCCTCCTTTTTCTGCAATGAATATGTCTTTCTTATGTAACCTCTGTGACAGCATCAATAACAGTTTTTAAAAGATTGAAAGGAAGACCGAAAGGCCCTCTTTAAAAGACATTGTGCCCAAACTTTCTCTCACCCCTCCAGGTCTCTCTTTAATTGCCTGCGTTCTCTATAGATTGCCCCAAATTTCACCACCATCCAGAGCCTGTTTCCCGGCAACCGAAGCTCAGAACGTTTCTCCTCTGGATACTGTTCCAGCACCGGCTTCCTCCTGTTAATTAGGCTCTTTGTAATTAGGCTTAATCATCTTATTAGGGACCCCTGCTGATAATAGTCCACTAGCCAGGAATCCCCAGGGAGAATGAATGAGTGTGGGGTGGGGAGGGGGAGGGTGTCAGCCCACTGACCCTAGGGACGTGCTGAGTGGACAGCAGTGATATCAGAGAGGGAGGATGGCCAAGCGAGAAGTGGGGGCAGCCCTCTGCCTCGGTTTTTGCATTTTTATCCTGGACTTTGTCCAAGAAGCAGAATCCCAGAAGAGCTGGCTTAAAACAAAACAAAACAAAAAACACCTTGTCCTAGAATGGGGAAAACACTCCTGCCGGACAGTCTCCAGGAGTACAGATGCCGAACCGTACCTCGATGGATTACAGGAGGATTTCGAGGCAGGGAGAGGAAGACTGCACAAGTGCCAAGCGGCCTGGAGTAAGACTGTGAGTGTGCACACGCAACACGGAACACCGGCAGGGACCAGTGGGCTTCACGAGTGCCACTAACATGGACATCAGCACAGACAGCATGTTTTCCATGGCGGCAAGCTTATTTGGAATCTTCCGTCCAAGTGGCCAGATTTGAGACATTCACTGTGCCCCTCCTTAGGACCAAAGGCTGTTAGGCACTGCATGACTGTCAAAATCCCTAAATCGCAAGAGAGGAAACTGAGGATCAGAGAAGTAAATTTGCAGGAGTTAAGTGGCAGAACCAGGTTCACATCAAACCGTCTTCTGATTAAAGTTGCCCCTTTTTAATCACAGCACAGTGACCTCATTATTTGGGGTGAGCACATTCAGATATTATGTCTATACACCAGGCTTTGGCCTGAGAATTCCGCCCAAGAGACCTGGAGTAGATTCTTGGCCCCATGGGTGATCCGTGATCAGGGTGCGGTAAAGAGCCTGCTACTGTGAGTGTGAGAACGGATGGGCTTGTCTGGCCCCACCTGTGTCTCTCAGTTCATGGACACCCCTGTTGGACAGACACGCACGCACAGCACAGTCCTGTGTGCTAAACCATGGACCCTAGGACTGAGTAGAGGAGCCGTCTCTCAGCGTCTGAGCACATGCTCCCCGCCCTGGCCATCAGGGTTCTGGCCAGCACAGAGAGGAAAGCTAGAGGCTTCTCTACTTCAGTCGGAGACTGGTGGTGTGGAGTGAACACCCCGGGATCAGGAAGACTGGAGGCCCCATCACTGAGCAGCAGCCCTAAAAGCCAACGGAGAAGGGCTTCCTTGCTGGCTCAGTGGTGAAGATGCAAGAGACACGAGTTTGATCCCAGGTCCGGGAAGATTCCACGTGGTGAGGAGTAACTAAGCACGTGCACCTCAACTACTGCGCCTGCGCCCTAGAGCCTGCAAGCCACAAGTACTGAGGCCTGCTAGCCCTAGAGGCCGTACTCCGCAATGAGAAGCCCACACACCGCAACTAGAGAGTAGCCTCTGCTCACTGCAACTAGAGAAATTATTTAAAAAAAAAACTCAAATCACTGGAGAGTTGATGGGGAGCAGGCCTCCTTCCCCTATGAGGCTTGAGGGTCCCCTATAACAGATGGTCTAGGAAGTGACTTCCCTTTGTGGGGTTACAACTGGCAGGCCATCTGGGGACATGAAGGGACATCTCACAGGTATACTGACCTGGGGACTTCACACTGTGGTTTGGGCAGTAATCCAGTGGTGAGCTTGGTGTGGGGTGGAAGTGTACCCAGTGTGAGGCTGGGTGCTGACCTGAGAAGGCCGCATGGCCCTTGAGTGTCTCATGAGGGTTTAAAGCTGCACTTTGGGGAAACGTAGGGTCCAGCTGAAGATGGAAAGGATTCTTACTCATCTCATTGGGAGGGGTTTCATCAGCAAAATGTCCCCTAACCAACATCCCTGGTGGCCCAGTGGTTAAGAATCCGCCTACCAATACAGGGGACATGGGTTTGATCCCTGGTCTGGGAAGATTCCACTTGCCTGGGGGCAGCTAAGCCTGTGCACAACTGAGCCTGCAAGCCCTAGAGCCCGCATTCCACAAGAGAAGCTACTGTAATGAGAAGCCTATACACCGAAAGCAGAGAAAGTCTATGCGCAGCAACAGACTCAGTACAGCAAAAAAAAAAAAAAAAAGAGTGTTCCCTAACTTCCTAACTGAGATGCAACCTGGAGCTGCACAGACTGGACCTGCATCAGGGCAGAACAAAACTATCCTTACACGTCTGTCAGGGGACTCGACTGGTGTGGCACGTCCCTGTCGTGTTCCACTTACACCATTGCTCTCTGATCTCTCTTTGCTGTTTTGATGGATGCCTAAAAGTAACCGTGACTCCTCTGTGGTCGCTCAATTGTTGGTCCATCCTTTCTGTTTCACTCTTTCTGTCTCTGCCTCTGGACATCGGGAGCAGATGAGAGCCAGGACCCCAAGTTCTTGAATGTTGGAAGAATTTTGAGGAATGGTGATGAAAATACTCCAGAGCCTGAAATCCCACCGACCTCCTCTGCTCACATCCACTCTAGCAGAATTTCATCAAAGCCCTGGCCCTACTTCTCCCTGTCACGATGGTTTGCACGACCAGACATGTCCTGGTCTCTAGAACCAGTGTAAGATGCTTCATTCTGCTGAGGATTAATTAGAAAGCTGCTTTTCTTTTAGAGAAATTTGCAAACCAAAGGAGTCAGGTGGTGATTTTTAGAGACCTGGAACAGCCGCGATGTGGAGAGTGTATTCTGTACTGGAGCCAGAGCTCTTGGCTTAAGGACCCCTCAGGGAGTCCCACGGAGAAGGTGTTTATTTCAGAAATCTGAGCTGACATCACCGAGTCACATATTTTCTCAAGGATCCTAGGATCTTCACCTCGTGCTTGCCTGCCAGGCATGATTTCACCTAATCAACTGATTCAGGCCGAATCTTTTGAGGGAAGAAGCAATTCAGGTTTTCTATACTTCAGCCCCTCAGTGAACCATAGCAAAATGGAAATCTTGGGCTTGTCCTACTTGGAAGGAAAAATACTATGGTTTGGAGATTACAGCTTTGAAAAGTAGAAGCCTGTCAAAGGCCCAGACATATACCATCCAAAGAATCAGAGATATAGGGAATTCAAAAAATTAGAATGAGGCCGAGTTTTCTGCTAACCAGCCACAGAAATTGAGCCTTCTCTGCAGCCCACAGAAATAGGACTTCCCCTGGAACTAGACCAGGACCATCCTCTGTGATTGTCTGCATATCCCACTTTGACATGGATGTCAAGCTCATCCATCAGGCAGGCACCCCAGCCTGACACCTCTGGGCCTCTTCCTCATTGGTTTACAGGTTTATCAGGAACCAGTCCCTCTTACCTCCCAGCCTCATCTGCCTTCCCTCTGCTGGAACCCTGTAGCCGAGCCATACCAGATTACTGCTTATTCCTTGAACACCTCCATTTCCTCATCTGTAAAATGGGAAGAAGTAATATCAATCTTATAGGGTTGTCTATAGAAGCAAATGACTAGTATCTTCGAGGGTCTTAGAACCTGGCATATAGCAAGCACTTATAAGCATTAGCTTTTTCCCCCCTAGTGTCTTGCATGTGTGTGTGCTCAGTTGATCAGCTGTGTCCTATTCTTTGCGACCCCATGGACTGTAGCCCACCAGGCTTCTCTGACCATGGAATGTTCGAGGCAAGATACTGGAGTGGGTTGACATTTCCTACTCCGGGGGGTCCTCTCCACCCAGCGATCTAAATATCTAATAAATATCTGCTGAACAAGTGAATGAAATGTATCCTCTCACTACTTGGCTCTGACTGTGCACTCGCCACTTCCGCTCCCCAGAATTCCCATCCATCTCCTTCTTTTTAAATATTTATTTTATTTATTTTTTATTTGGCTGCACCAACTCTTAGTTGTGGCATGTGGGATCTTTAGCTGTGGTATGCGGGATCTAATTCCCCGACCAGATATTGAACCCAGGCTCCCTGCATGGGGAGCACAGAGCCTTAGCCAGTGGGCCACCAGGGAAGTCCTTCCATCTCCTGGCCTGACTTGCTTCTGTGTCTTTTTAAACCCTACTCAGGTGTTTCCTCTTCCTGGAAGCCTTCCCAGCTTCTCTGAGTCTGGTGTTCCTCCTTTGTGCCCCACTGGCACCCAACCCCTGCCCTCATCCTTGCAGTCATCCCCTTGAATGCACTGCCTCCTGATTTTCTCCCCACTAGACTGTTGAGTCCAGCACGCACGAGGAGCACTGGCTACGTGAATGCTTGCCCTCCCTAATTATATTAAAACTATAGCTAAAATCTGCTGAGTGCTCACAATTTTCCAGTTACTAAGAGACAGTTTTAGGGAGTTTAGGTTCTTTAACCTTCACAAAAGTCCTCTAAGAGGTGGAGACACTCAGAAGTATTCCCATTCGTAGGTAAAGAAATCAAGTCTTAGGTTCAGTAACTTGCCAAGTCAAGGCCACAGCTAAGCTTTGAATCCAGGTGGCAGGGTTGTTAACCATTACACTGCACTGGCTTTTTGTTCAGAAAGAAGTGTAGTGTGGGTATTTACATGTCACACACGAACAGTTGTAGTTTTTAACTTCACTAAGTGAACCAGCAACTACAAGTGGGAAGAACTGGGCTGTTTTTTTATGAAGTTTGTGTTTTGTTGTAG
Seq C2 exon
GTTCGGACAAGTGGACCTCCCTAGAAAGAAAACTGTTTAATAAAGCACTAGCCACTTACAGCAAAGACTTTATTTTTGTACAGAAGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015321:ENSBTAT00000020376:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0024926=Myb_DNA-binding=PU(47.5=93.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]