RnoINT0155647 @ rn6
Intron Retention
Gene
ENSRNOG00000022598 | Trerf1
Description
transcriptional regulating factor 1 [Source:RGD Symbol;Acc:1307167]
Coordinates
chr9:15676776-15685030:-
Coord C1 exon
chr9:15684955-15685030
Coord A exon
chr9:15676865-15684954
Coord C2 exon
chr9:15676776-15676864
Length
8090 bp
Sequences
Splice sites
5' ss Seq
CCGGTAGGT
5' ss Score
9.39
3' ss Seq
GAAGTTCTGTTTTGTTCCAGGTT
3' ss Score
8.98
Exon sequences
Seq C1 exon
GCTACCCTGGAAACGCTGCTGCTGCGGAAGCCAGTCAGGTTAAAATGTCATCCTTTAGCAAACTACCACTACGCCG
Seq A exon
GTAGGTCGCCAGGATCCCCAGGCCCCGTTGCTTCCTAAGAGTGGGCAACTCACATTTGGTTACGTTTGTTTGTGGTTATTTATTTGAACAAATATGTAACACTGGGTCTATTAGCCCGACACTGCCACGCATGTGTCAGTGTAAATACCTGCCCCTGTGAATGTCCCAAGACCTGGGAGATGGCTCACGGGGGCTGCCCACCTGGCAGTGGGACCTGTGCATCAGAGGAGAGAGCCACCAAGGCCACAACACAGAGCAGACTATTAGCAGCCTGTGCCTTTGGAAGGTGGGTTCAGGTCTTGATCAAGGCCCTAGGCTTTCTGTAGGCTTGAATTAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCGAGCGCGCTAACCCAGTGCCTGGAGAAAGACTTCATTCATATGTGTGTCCTGTGTGTGTGTACACGCGCGCGCACGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTGCTTGCTCAAGAGCACATTATTGCAGTGCCCACAGAGGCCAGAAGAGGTGACAGATCCATGAAAGCTGGACTTAGAAGCCATTTTGAGTCACCTGCCCCGGTTCTGGAAACCAAACTCCTGTCCTTTGCAAGAGCAGTATACACTGTAGAACGCTGTGCTGTCTCTCCAGCCACCTCCCCTTGATTTGTATCATTTGAGGGTTTCCTTGGTGTCTTGGGCAGACCACCCCTAGGCAGATGCTGCATGTATGGTCTTGGGGCTCTGTTAACATCACTTCCAGTCCCTCTCCAGACAACCAAACTCAGCCCAAATGTGAAGGTTTCTTTACAGGTCCTGGCTCATCCTCCATTTGTCTCTTCCTCCGTCCTTTTCTTTACTTGTGCTAAGTTGGCTTTGTCACACCTCTTGTCACCAAGTAGAGAGGCCTCAAAGTTGCTTATGAATACCCAAGGACACCTACCTATGGGTCATGACAGCAGTTGCAAGGAAGAGACAAGCACCACATGCTTACTTGAGGTTAAAGGCATCATGTAACCAGGGCCAAAGAGCCAACTTCATCCTCTCCCGCTTGTGTGGGTCCAAAGATGTGGGAGCTCTCCAGCCTGCCGTGTTTCATCGCCGCCTAATCCCCAGCATCGTATGCTGTTCCATTAAACCCTGGCAGGCGCTCCCAATTCCTGGATCCCAAACATCTCTGCCCAGTGGGTGGAGCTTCGTATGGACTAAAAGAAGCGTCTCGCCACTAGCTGAGAGATGCTGTATGGGTTAACCTCAGGTCACACTGCCTCGCCAGAACCTTGGGCTTGGTCGTGGCCAGCTGTGAGCCTCTTCATCCAGGACATGATTTCTCTCCACTTGTTCCCCAGCGTGGTATTTTTATATGCATCGTGACACAAAAGACCAGGAAGCTATGGGCTAGAACACGTCCAGCCCCAAGCAAAACAAAAAAGATGAAAATGTTACCAAGAACTTCGAAGGTCCGCTGAGATACATTAAGCTTTTTGGATTGAGTATTGCTAACTAATCCATTCCCACAACACCTTCCCTCCCAAATACCTTAGGAAAACTCTTGCTTCGGAAGTCATTTCAGCCCTCAGAGACCAGAAGTGGGAGTGACCGTCACCTAAATCTTCCGGTCACTGGCCTTCTTCTCAAAGTGATTACAAATGCAAGAATATTCTAGCGTTGTGAGCGCATGGGGCAGAAGACCTAGAATCAGATACAGCTCCTACCTTTAACAGTTGCCTACCAAGACATGGGAGACAACTGAGTATCACAGCTTGTGACCCAGCCACCATGCCACACTCTGACACCCCCTGTATTTGGTTCCTGAGGGTCACTGAATCCTGTCCCATCATAGCCATGGCCTGCCTTGGTCTTCCTGCCCAGAGCCTTCCTACCACTCCCAGTTGAACAGTCACCTCAATTTCTGCCTCGTTGGAACCTTCTAGTTCTCTAGGGCTTCCGGCCTGAGAACCAAACCCATCTGACTCCTGGAACTTCACTTTAGGCTCCGAGTTACTGCTCTGGTTTGGCCTTCATTGCTGTGATAAAATCCTGACCAAATCCAACCAAGGGAAGGAAAGAGTTTATTTGACATACAGCTTATAGTCCACCATTGAGGGAAGCCAAGGCAGGAAGCAGGAAGTAGACTCTGAACCAGCATGGAGGAATGCAGCTTGTTGGTTTGCTTAATCTGGCTTCTTCCACTGCCTTTCTTACCCAACCCAAGTCCACCAGCCCAGGGATGGCACCACCCACAAATGCCCGGGCAGTTAGGAAAATGTCTCACAGACGAGGTCACAGGCCATTCCGATGGGCCATTTTTTTTCAGTGGAGGTTCCCTCTTCACAGGTGTATCAAAATGTGTTCCAACTTAACCAAAAGCTAACTGGGACACCTAGAGAAGGAAGTCAGAGCCAGACTTTGCTGTGCCCCAGAGGAAAGGCAGCCAGACGGGACTCCTAGGCAGACAGATCCAAGCCTGTGGAAACACTCCTCTCCCTCACTCGGGACCAGGAGAGGGAATGCTATGAGGACCAGTAAGCAGGGCAGGCGTCCAACCCAGGCCTGAAGTTAGTCTGCCAACATTGAAGAGCATCCTCAGAACACAGCTGTGCAGTGCTTCCCAGGGCTCAGTCCATACCAGGACAGTGTCCTCCTCAGTCCCCCCCACACCCATGTGTGGCTAGTAGTCCTCTCCAGTGTTTTCACTTAAGCACTCACATACGGCCTGGGGGTGGGGGTGGGGTATTGTATATGGAAGAGCCATGGTGGTTGTGGTCAGACAGCTGGAGCAGCTGTGATTTCGCCACTGAACATGTCTTTTATGCATGTGCAGGGTATTAGGGATGGTAGAGTTAGATCTAGCTTCTTTGCAGGGTACAGTGAAGATTTCTGTCATGTCCCATCACAATCACAAGCACCCACTGGGGCCTCAAACCCTGCCTTGATTTTTGAATGACAGATGAGACCTGGGAGAGACAGCCTTTCCATCAGAAGAGTCTAGGCTCTTGTCCTGGAAGCTGCCCAAGGTTAATAAGGAGACAGAATTATGTACTTGCGAGAATTACTTTGCAAAGAACACAGCTGTGGGTCCTTCTATTTTGTTTTATTTTACTATAATAGATTTCTTACAGCAGGACCTGGGTCAGTACTTTCTCTTTTCTCTCCTGACACAGCATTTGCAAAAATACTATTTAGTGACAAACTCAAAATACGGATTCAGACTGAGGCCCTTCCTCCTTCCTGCACCTAGAAGAAACTTGGGTAGCAGCTTGCATTCCAAGAAAAATAAAATCTGACCTTTACCTGCTATAAATAACTCTGTATGACATTGAAAATCTGACATAAAGTCTCCCTTTTTTTTTTTTTACAGTGAGCCCGTCTTTTTGCTGTAACCACAATAATGACATCAATAAAAGTTGGGTGGTTTTTTTTTTTTTAAATCCTGAAAAGAAGCCAGAGAGACCCTCTAAAAAGATACTGTGTCCAAGTTTTCTCTGCCCCAGGAATGTCTGTTTTTAATTGCCTGGATTTGCTATAGATTGGCCCCAAATTAGCCACCATACAGAGGCTGTTTCCCAGCAACCAGAGCTCTGAGCATTTTGCCTCTAGCTACCATAGTAGTGCCCATTTCATCCAGTTAATTAGGCTCTTTGTCATTAGCCTTAATCGGCTTGTTAGGGCCCCTGCTGATCATAGCCCAATAGCCAGGAATCCCCAGGTGGAGCGAGTAAGTCTGGGGGAATGTCAGCCCACTAACCTCATTTGCCAGGCTGGAGGGCAGCAGAGATCTTACAGAGAGAGGCAGAGCTTTGAGAAACCAAGCCAGGAGCTCCAGCAGGGGCAGGCAGCCTTGTAAGTAGCCACACATCAGAGGGACAACATGTGTCCCATTCATAGCCGGAGCTGACACAGGATCTGCCTCAAGTGTCCCGTAGAGACGTGGAGCATCCACTGAGCAACTGCTTATGACCAAACAGTGTTGGTCACAACTGGCTACCCGTGCCCAAGGGTGAGGAAACTGAGAAGCAGACTTCCCTGCTGTCGCAGAAGGAAGAACTGACGGGGACACACGCACAGCAGAAGCCCTCCTCACCAAAGTCGTCCCCTTCGTCACGGCCCAGTGATACCATCTGGGGAGCGTGCTCAGATGTTATTTATCCACACCAGGAACTCAATCCAAGGCCCCGAGGGTGGAGCTTCAATCCCAGGGGCAGTCCCTAGTCTCAGGAGGCCACTTGTTGTGTGCCAAGCACTGTCCTTTTCACACCTCCTAGGACTGCACAAGAGCTGTGCTCTCGAGGCTTGTGCTCCACCCCTGTCACTGTAGCCTCAAAGTAAGAGTGACACAAGAGAAGAAAGAGAGCCACCATTCCATCGTTTTCCTGGACAACTGAAGACCTGAGACAGAAAAGGTCATTACAGAGCAGCAACGCCCCCAAGAGGTCCTTTTTTTTATTCTTTCAAGTGTGGAGACTCCTGCCCAGCAGACGGACCAGCAAGCCTTATGGACACAAAGGTGTGGATGTCTCAAAAGTAGGCAGAGCTGGGAACTTAGCACTGCTCTTTGGAGCTGCAGCGAAAAAATGAGCCCAGCAAGGCGCAGTAGCTAAGTGTGGCCTCCATAGAGATGCCACACTGGCTGGCTTGAGAAGACTGAGTAACCCTGCCAACGTCTCCAGGAGAAGTGGCAATAACTCTGAGAAAAGCTGGAGAGCATCTTCATTGGCCTGCTTGGGGTGGGCATCTCAGCATCTCCTGATGCTGCATCTGAGGGAGCATCCAAGAGCCACCCATCCTTGAATCGCAGGGGACAGCACAGTGCTCCCTCCCCTTACCAGCTGCTGTGACTGAGCTTCCGGCGCTGTCTTTCTGACCCTCTTACCTCTTCACTGTCTTGATGGACACCTGAAGGAACCGGGACTAGTCTTTAATCATTCCACTAAACTCGCTGGCTGGTTAATCTCTGCCTTCATCCTCTTTGGACCTCCCCAGCAGCGGAGAGGAGCTGGAAACCCTCTTCCCCGTCCCCCAAGGCCCAGAATGTTCAGCATAATCTGAGGAACATTATCGGATGGCTATAAAAGCACAGATGTTCCACCCCCACCCCATACACACAGTTGCTGTGCTTTGCACACACTATGGAGTGAAGACGGATCTGAAGACGCTCCCTCAGAGCCTTCTCTTCAAAACTGTAAGGATATAACCTTGCAGGATGGTGGGATAGTGATTTTAAAGTCAGCGGACTCTAGTCTGTTCAGACGAGAACCTGAGCTCTTGGCGGAAGACCCAGCAAGGATTTATGCAGAAAGGGTGTTTATTTCAGACACCTGCATTTACATCGCTGAGTCATGCACTCCCTCAGCAGTCCTAGGATGTCTGCCCTCTCTTGATTCACAGAGGGATGGAGAGAGAGAGAGAGAGAGATACATACATACATACATACATACATACATACATACATACATATGTGTGTGTGTATATATATATATATGAATAGAAAATGCTATTCAGATTGCCTCTCCTTATGTCCTGTCAGATGACCAGAGTACAGTGGAAAACTGTATAGATGCTAAGGGGTTGGGCACAGTGGTGCACACCTATAAGCCCAGTACCTTGGCGGCAAAAGCAAATAGGATCTGTAAGAGGCCAGCCAGGGCTACACCATGAGACCTCTTTAGGAAAAACAAAGAAAAACCATAGTTTTAAGAGATGCGAGAAGGGAGACAGAATTCTGTCAGCATGCCATCCAGGAATCCAAGATGTCAAGAGTTTGAGAGACAAAGAACAAACTGTGGCTATCTATGTACCCACTGCGGTGGTTGAACCGGCCCTAGCATTCCCAGGACTAAGAGGCCTATGTTTTCTGTTGCTACCATGAAATGCTTGAGGTTGAGTGTTTCATGGAGAAAATAGATGTATTTTGTCTATAGTTTGTTTTTTTTAAGTCCATGGTTAGGTGCCCTATGGGCAGGGCATCATGACAACGTGGCGCCATCTGGGCAGGGTGATTATAACAGGGAGACATCACTTGGTGAGACAGCGAGCCAGAGAGTCACTGGGGAGGGGCTGGGAATGGCTTCCTTCCAGGCCCCGCCTCTCAGAGGACCACCACTCAACACCAGCACCCCATGGACCGTGCTTATAACCTGATGCTAGAAGTACACATCTAAATCTCTCCAGACCACAGCAAGCCTTCCTCCCACCACCTAGGCTTGGTTTCTTGCTCCAAATAAGCCATTCCATTTTGAATCCAGTCTCTCCTCAGCACAGCCTACTCTCCTAGTAAGGGAAAACCATGAATCAGGTTTGATCAGCGAGACATAAATAGTGGGTTGAAGCCTGGTAACTAGTGAGTATAAAATACTTAGCACCTGGAGTGTAGCAAATATTGTTAAATGGCGGCTTCCTTTAGCTGTGTGTGTGTGCGTGTGCGTGCGTGTGTGTATGTTTGCGCTCAGGCATTCACTCACATGCAGAGGTCAGAAAGAACAGGCATCTTCCTTTATTGTTTGGGGCAGGGTCTCAATGATTCTGAAGCTCCGTTCATGGTATTGTGGCAGTTGCCACCATCTGGACTGAGTGATTATAATAGGTCACCTGGGGCTGGAGACATGGCTCAGCGGCTAAGAGCACTGACTGCTCTCCCAGAGGTCCTGAGTTCAATTCCCAGCAACCACATGGTGGCTCACAACCATCTGTAATGGGATCTGATGCCCTCTTCTGGTGTGTCTGAAGACAGCTACAATGTACTTACATATAATAAATAAATAAATCTAAAAGAAAATACATAATAGTAATAGGTCACCTGGTGTGACCTTTAAAACTCCAGTGTGATTTTTTTCCCTACCTCATGACCTTTCAACTGTCCCAGCCCTAACCTGAGTGCAGTGTTCCTTCTCTGTGTCATGGTTCAACAAGGCAGGCTGGCCAGTCGTTCTGTAGGATTCACTGGTCTCTGCCTTCGACATAGGCATGTGTGGGCCATGCATGTTTTAACATGAGTGCTGGGGATTTGAACTCAGGTCATCTTGTTTTCACAACAAGCACTCTTACCCACTGAGACACACACACATACATGCACACGCACGCGCGCGTGTGCACTCATGCACAGTCCCTGATAGCTCTTTCTTCCTCAATTATAGCTGACACCCAATAAACATAATGAATGAAAGAATAAACTGGATTATTCTTGTCTCTGACTTTGCACTTGACTTTTCCTGCCCCAGAATTCCCTTCTATCTCTTCCTTGCCTGGCTGGCTTTTGTGTTACCTTTCAAACTCCACTGTGGTATTTTTTCCCCACCTTACAACCTTTCCGACTGCCCTGGCCCTAATCTGAGTGCAGGGATCCTTCTGTGTCCCACCAGACCCTCATTTACCATCATGGTTGTAGCTGTCACCTTGAGTACCATGGCCTTTAGGCTTTGCAATGATGGAGTCTGTGAACCTAGCCACGCTCTGAGAATCGGTAACTACATGAGCGCTTACCTTCATGAATTTAAGAGTTGAGTAAACGCTACGGATAGGCCTCACCAATGGGCACTCACATCCCCACCCCCATCAAGCTTTAGTACGGGATTTTTAGTCTTCACAAAAATCTAATGTGGGGACAGTTCTATGACTGCCGTTCACTGGTTACAAAGCTGAAGTCTTGGGTTTAGTGGCTTGCCCAGATCCAGAGCAGGGCTGCTGGTTACTGCATTTCAAAGGCCACTGTTTGGTTTTCCTAGGCAAGGCTTCACCATGTAGCACAGGCTGGCACTGGACTTGGTCCTCCTGCACATACCACTGTTCCAGGCTCTAGACTAGCTTTGTATTCAAACAAGGGTTTCCATTTTTCTTGTTTTGAGACAGGAGTTCATGTTGCACAGGTAAACTTTAAATCCACTATGTAGCCCAGGCTGGGGTTGAACCCCTGACTCTCCTAACTCTGCCCCCTGAGTGCTGAGATGGTGGGTCTGCAACACTTCTGTGCCACAGTTTTGTTTTGGGGTGTGGGAGATGCGAGAGAGTAGACTGTCCCTAACAGAAGTTCTGTTTTGTTCCAG
Seq C2 exon
GTTCTGACAAGTGGACGTCCCTAGAAAGAAAACTGTTTAATAAAGCATTGGCCACTTACAGCAAAGACTTTATTTTTGTACAGAAGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000022598:ENSRNOT00000035907:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0024926=Myb_DNA-binding=PU(48.3=93.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]