Special

GgaINT0078882 @ galGal4

Intron Retention

Gene
Description
transcriptional regulating factor 1 [Source:HGNC Symbol;Acc:HGNC:18273]
Coordinates
chr3:22208695-22214021:-
Coord C1 exon
chr3:22213946-22214021
Coord A exon
chr3:22208784-22213945
Coord C2 exon
chr3:22208695-22208783
Length
5162 bp
Sequences
Splice sites
5' ss Seq
CTGGTATGT
5' ss Score
8.14
3' ss Seq
GTATGTGTTGCTTTTTTAAGGCT
3' ss Score
7.67
Exon sequences
Seq C1 exon
GTTACTCTTGAGAAGCTGCTGTTGAGGAAGCCAGTGAGATTGAAGTGTCATCCTTTGGCAAATTACCACTATGCTG
Seq A exon
GTATGTTTCCTTGCAATCTCTGTATCTGCTCTGTATCCAGTCCAAGGCTGGCATCCCAGGCTGGTGTGTGGGATCCCGCTGCACTCTCTGCTGTCTGCTGCTGGGATGGCAGCCTCTAATAGAGGGTGATGTGGACAATGCTGAGTGGTACTTCCAGAGCCTTTTGTTTACAAGTTTGGCGGTTTTGCCTAACTAATGATGTACAGAAACCCCGTATTCATGTTTCTATGTAGGGTCCTGCAGGTTTAAAACTGCCTTGGGTATTTATTTTCCTTTTAACTAAAATTTAATATGTTGATCTTCTTTTAAAACTTCTACTATTCATAGATCATTGTTTTACAAGCAGCGAGTTTTCCTACTCTGGTGTGGAAATGTCTGCTGCATTGCCTTTCTCTTCCAATGCGGTGGTGTGATCAGTGACTGTGATAATCATGAGCATCCACCAAAAGAGACAGCGCTATAACTCTCCTGTGTCTTAGTGCTGAATGCAGAGCCTCTTTTTGCATGGATATAGCCTAAAAGAAAGAGGTTTGGAATGGTGTCAACTTTAACAAACACAGCGAAAATCTCATTTTGATTATGGAGCAGAAGTGCTCTGTGAAATACACGGAGTGATGTTATCATCACCTAAGCATAGCTCAAGATAGCAAATGTCCCTCCTCTGCAGAAGTCCACATTATTGCTCAAGGCTTTTGTAGTGCCTAACAGCTACTTTGACACATGGAATTTTTCGTAAGGGACATAAGACTTTATCTCCAGTTTGGGCTCTGGTGGAAATAAGCCAAGAATCTTCTGGTAGTCAGTCAGACAATCACAATATTCAGGGTGATATACTCATTTCCAGTTATACTCATTGTGTCACTTAAGTGTAGAATCAAGTTATTTGCTGACTGTAGCAGTTCGCTGCAGAGATTCTTAAGTAACAAAGACTCTTTTGTAATGAACTCCTGGCCAGGACCTGAGACAAGAACGGTAATGTGTCTGATGGCAGCTAATCACAAGGGTGAATGAAGGTGAAGATCAGATTTGATTCTTAGAGGAGGGAGATGCCTTGTGCCTTTGAAAACAATTCCATTGCAGTCCAGAGTATAGATATGGGGCTGGATGGAGGAGGACGTCAGCCAGGAGCTGTAACCAGGGTTCCTGGGGGTTCTTGTCTGAAGAGCTAACTCCAAAGCATATGTGAGGTGGTCCAGGGGAGGAAATCAGGGAGATGCTGAGAGATCCCAGCAGCCTCATCATCAGTGAGAGGTTCAATTAGCTCAGCAGATGAGAAATTTCTGCTTGTGTGGCAGAGGAGCAATAGCTTTCGCTGAAACAAATTCATGGTAGTTTTAATAAGTCTATTATTGTGATGCTGGGAGGAGCTAGGAAACATCATTTTATTTCATCTTTCACATGGGAAGATGCTAATGTTTGTACCTAGCACTGAGACCTGTGGACATTAGAGAAACTCTACTTAGGGAGGAAAAGAAATTGTCTGCATATTACAGCCCAACAAAATCTCAGCAGTGTGGATTTAAGCAACAGAAAATAACAAGACAAAGCATTACTTAATAATGCTCTTGAATGCAGCATGTGATTGCAGCTTACATTGACAGCTATGTTCTAGCACCGTGTAGCTCTTGAATTATAGTCTTTGTGGTTGATAAGCAGCCACTCGAGGCATATGGGAATTTCTCAAAATCTAATGTGTGAATACTTTAATATAACTTCAAGTGGTGTTTCTTTCAGTTAACTCTTTGGGCTTCCTGCTCTGTGTTCAGAAGTAACAGCTATCAGGAACAGCCACAATTTAAGGTGGAGTAGACCACAATAGAGCGTTACAGTGAACTCCTGAGAATCAACTGATACCACAGACAGTAAATATCCCGACTCAGCATTGCCTTCAGACAAGGGAGCAAGCGATAGCTTGTCCTTGGAACCTGTTGGTTTGTGAGAGGAAGTTGTAAAACTTCAGACCTTTCTGTTCACCAAGAGGGTGGGGCATGTTGACTGAAGGCTGCTTGGAAGAACACCCTAATCTCTTCATCCTAATCCTTTGCTGTCTGCTGGAGAAGAGAAGGCCCTGAGGAGACCCCATGGCAGCTTTCCTGAACTTAAAGGGAATTTATAAACAGGAGGGAGACCAACTGTTTTCTCTGTTTGATGGTTGTAGGATAAAGGGGAATGGTTTAAAACTGAAAGAGGGGAAATTTAGAGGAGATATTAGAAGGACGTTTTTTACTCATAGGGTGGTGATTCAGAGGAACAGGTTGCCCAGAGACGTTGTGGATGCACCATCCTTGGCCCCAGGTTGGATGGGGCCCTGGGCAGCCTTAGCTGGGGAGACAGCCCTGCCTATAACAGGGGGCTTGGAAGTGGATGAGTTTTAAGATCTCTTCCAACCCAAACCATCCTTCCATTCCATGATTCTATGATTTGTCTGGATGGTGTAGTAGGGAAGAGAGAGGGAGCATATGCTCAATACAAGAGGGGTGCTTGATTTGTTTTTCATTTAAGCAGTGGAATTTCTCAGGTCTCCTGCAGTAAGAATGGTGGGAAAGGTGGTCTCTGAATTAGTATGCTTCAGGCAGTCTGAAAACTTCTGATAGATGCTATAGTGTGTGGATCAGACCCAGCATATGCTGAATGTAATAGATTTGAGCTGCCTTTCAAGGGGAGCTCCCTGAGTGGAGGTGTAGTAAATCCTTAAAAGATATTTTTGTGAGTTAATCAGAGCAAAAACAGTATTTTAATATGGCAGAAATGTATAATAAATGTTTAAGCCTAAAGATCATCTTTAAAATTTGATCTGTATTCCTAAGTCCAAAATTCTTTCTTGCTGCATTGCAGATTTCTCTATACACGTTCTGTATGTCTCCCTCAAGCTAACAAGAGCAAAAGCGGTTTCCCAGCAACCAGAGTTAAAAACAGCTTTTCTTCTGTTTCTTTTCCTAATGCAGGATTTATTCTATTAATTAGGTTACTTCCAATTAACCCTCATAATCTTGTAAGGGTCTTTGCTAATACCATAGCTACTGGGGAAAATCTGTAAGGCCTGAATTTTCCATAGTTGTACAAGGGAATTCGTTCAAAGAAGTGATTTTTATCATTATTATTATTATTATTATTTCAGGAGAGATCTAGAGAGGTTTGCTGAAAACTAAAATCCATCCTTGGCTGTTGTCAAGCTTTTTGAAATGTTATTTTGACATAGTAGAATAGGTTTCTGGACCGAATCAGTGCATTTACCCCTTCTGAAAGGGAGGGTAAAAGCAAATGACTGGCAGGCAGTGTAGAAAGGGAGCAATGCTGGTTCAGGAAGGGAAAGACAGCAAGGCAGTGTGTCAGCAGAAAGATCTTTGGGTGATAACAGAATAAATAAAATTTGCTGCATGAAGCCAGTGCCTTTTTCTGACACTTAGACCGGGAGCTTTACTGTAAATCTCTGTGGAAATAGCTAATGCGTGCTTAGAGCCAGTACTGGAAAAGCGTACAGAAAACAGGTTGCAGAAAAGTTGATTTTGTAGTTTTCAGTATATAACAGAGTGGTGACATACTCTCTCTAGGCTTGTGAGCCTGGGAATTGACACTGAAAAGCAAAACATTTGCAGTTAATAAAAAATGCATATATTGTTAGACTTAAATAACCTGCAGAGTTGAATACCACACGTGGTGGCAAGCCCAAGTTAATTGAGTTCAATGCAGAGGCAAGCATTTGTGTGGAGAATGGTAACACTGACAGGAATATTCGGGATTTCTTTTAATGATGAAAGTTGCACGTACCCTCAGACGGTCTGTAGTAGAATCTTCTCAGAGTCATTTCAAAGGCATCTGCTTTATGGCTTCTTGTATATCCTTCTTTTAATGTATGTGATGCCTACTATTACAATCAAGACACTGGTATTTGATGCAGTAGAGCAATTCTGTGCTCCTTCTGTTTGACCGATACTGAGGAAGCGCACATTCATTTCTATTTAAATGTTGATTTTGCATTTTCATGGGCAGTTAGGCTGGTGAAGCAAACAGAATAATAATATTTGAAAGCTTTATATACAGCTTCCATTAACCGATCAGGAAGCACTTTGCATGGTTTTCATGCTGCTGTACTCTCTCTGTCTACTTGAGGCCTCAATCACAAAGAATTGGTGTCTTACCTCAAGCCACATACAAGTGAAAAGCTGCAAAGGGATTTTTTGAGAGTTAGTGCCTGGAGAATTAAACAATAGATGGACTTCCGTGTAGCTGAAGATAAAGTGGTGTATGTAGGAATAGGCAGTACAAGCACTGCATCTAAAATGATGAGCTCTGTGGTGATATTTGCCCATTAGAAAGAGACCTTGGGATTATGATGGTAGTTCTGTGAAAACATCAGCTTTGTATTTTACAACAGCTTAAAGAAAAAAAGCCACAAGTCAAATGTTAAGAAACTCGAGAACATGGTGATGCCACTGTGCAAGTCTGCAGATTGAGTATTATCTGCCTTTTTGGTCCCTGCATCTCTAAAGGAATGTTTTAGTACTGAAAAGTGTTCACAGATGGACAACAGTCATGGCCAGTGGTGTGGAAGTGACTTGGGCTTATTAGTCTGGAGAGGAGGAAAAAAATAAAGTGACAGAAGTGGAATGCAATCCCAAATAGCATGGAGGTGATGGTAAAGAATGGGTTCGTTTTCTCTTCCTCTTGAAGAGTGAGCGGTCATCCAGTGAAGCTACTTGGGAGCTGGGAATCAAAGAAAAGGAGGTGGTTTCTTCATGCAGAAGGTCTACTGATCTGCACAACTCTTTGGTAAAGGATACTGTGGTGGCAAGAGACCTAATTAGTTGGAAAGAAGATTGCATCAGCACTTAGAAGGATGGTTACTAAATAAGCAAATCGCAACAGATTAAAGAAATCCCCTGAACTGCAAGTGGTCAGAGGCTAGGAGAAGTTAGGGAGAGGCGTTTGTATTTGCTTGCCCTGATTTTACTGTTTCCTTGGCAACTGCCTGTGACTGCTGCTGGAGACAGAGCGCTGGTTAGGTGGACTTGAAGTCTGAGTCAGTACAGCCATACTTGCATTTGGGTAGCAGCAATCACAAGCATGTTCTTGAGGTTTCCCACTTTTGGTGTTACACCAACATAAAGGTGGTAGGTTTTTATTGCTTTTAACGAATTCACTGTATGTGTTGCTTTTTTAAG
Seq C2 exon
GCTCCGACAAATGGACACATCAAGAAAGGAGGCTGTTCAAAGAGGCATTGTCCACCTACAGCAAAGATTTTATATTTGTACAGAAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009896:ENSGALT00000016090:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact

ORF disruption upon sequence inclusion

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):

C1:
NO
A:
NA
C2:
PF0024926=Myb_DNA-binding=PU(60.9=93.3)


Main Inclusion Isoform:
NA


Main Skipping Isoform:


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]