DreEX0020196 @ danRer10
Exon Skipping
Gene
ENSDARG00000019383 | cdc42bpb
Description
CDC42 binding protein kinase beta (DMPK-like) [Source:ZFIN;Acc:ZDB-GENE-030131-3647]
Coordinates
chr20:18496541-18507180:-
Coord C1 exon
chr20:18507063-18507180
Coord A exon
chr20:18499131-18499322
Coord C2 exon
chr20:18496541-18496649
Length
192 bp
Sequences
Splice sites
3' ss Seq
TCTGTTTGCGGTGGCCGCAGCCG
3' ss Score
5.47
5' ss Seq
AGGGTAGGC
5' ss Score
7.26
Exon sequences
Seq C1 exon
GGAGATGCTGAGGGATCCTGAAATGAGATCCAAGCTAATCTCTCACCCCACCAACTTCAATCACGTTGCTCACATGGGCCCAGGCGACGGCATGCAGGTCCTCATGGATCTGCCTCTG
Seq A exon
CCGAGCGAGACTCCCTCCCCCTCATCCTCTCGCCACCATGCCCTGATCTCCCCTCCGACCAACTTTGAGCACGTCTATCACATGAGTCCCGTCTCTGCCGGGCTCTATCTGCAGAAAGAGCCTTCCTCCCAGCAGAGCCTCCTTCAGTTCTCCTCTTCCTCCTCCTCTCCTTCCACATCCTCCCTGGGAAGG
Seq C2 exon
AGTGTGATGCCCTCTTCTCAGGATGACCTGTCTAAAGACAAACCTCGACCTCTGTCTAGCATCTCACGCCAACAGAGGAGCAAGACCCACATCACCCGTACCGCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000019383_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.995 A=0.938 C2=1.000
Domain overlap (PFAM):
C1:
PF0078623=PBD=PU(46.6=67.5)
A:
PF0078623=PBD=PD(23.7=14.1)
C2:
PF0078623=PBD=PD(50.0=78.4)
Main Inclusion Isoform:
ENSDART00000049437fB1802
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGATGCTGAGGGATCCTGA
R:
GTACGGGTGATGTGGGTCTTG
Band lengths:
219-411
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]