DreEX0023506 @ danRer10
Exon Skipping
Gene
ENSDARG00000021720 | col7a1
Description
collagen, type VII, alpha 1 [Source:ZFIN;Acc:ZDB-GENE-030131-2427]
Coordinates
chr6:40222880-40224188:-
Coord C1 exon
chr6:40224153-40224188
Coord A exon
chr6:40224003-40224047
Coord C2 exon
chr6:40222880-40222993
Length
45 bp
Sequences
Splice sites
3' ss Seq
TTTAATTTTCATGTTTTAAGGGT
3' ss Score
8.31
5' ss Seq
AAGGTATTT
5' ss Score
7.64
Exon sequences
Seq C1 exon
GGAGATAAAGGGGAGAGAGGTGACAAAGGACCAGCT
Seq A exon
GGTCCAGCAGGATTACCCGGCTTAGGGGGGCCTCCAGGGCCAAAG
Seq C2 exon
GGAGATTCTGCTTCCGTTCAGAGTGGTTTGCCTGGTCCAAGGGGTCTGCCAGGCCCTGCAGGTGTCCGAGGAGAGCCAGGTGCAGTAGGACCTCAAGGATCTCCTGGAGAGCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000021720-'81-84,'81-83,82-84
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(17.5=100)
A:
PF0139113=Collagen=FE(22.2=100)
C2:
PF0139113=Collagen=PD(7.9=13.2),PF0139113=Collagen=PU(50.8=84.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGGTGACAAAGGACCAGCT
R:
CGCTCTCCAGGAGATCCTTGA
Band lengths:
134-179
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]