GgaEX1016997 @ galGal3
Exon Skipping
Gene
ENSGALG00000005811 | COL7A1
Description
NA
Coordinates
chr12:9341667-9342230:+
Coord C1 exon
chr12:9341667-9341738
Coord A exon
chr12:9341883-9341918
Coord C2 exon
chr12:9342171-9342230
Length
36 bp
Sequences
Splice sites
3' ss Seq
ACCCCTCTCCTTTCTTTTAGGGC
3' ss Score
13.64
5' ss Seq
AAGGTAGGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
GGTGCTTTTGGCTTCCCTGGGAGAGATGGTGCCGCAGGGCCACCTGGACCCCAAGGGCCCCCAGGGCCAGTG
Seq A exon
GGCATACAAGGGGCCTCGGGGCTGAAGGGTGACAAG
Seq C2 exon
GGTGACCCAGGGGCTGGGCTGCCAGGAGCCAGAGGTGAACGTGGAGACCCAGGACCACGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005811-'84-89,'84-88,85-89=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(1.6=4.2),PF0139113=Collagen=FE(39.0=100)
A:
PF0139113=Collagen=FE(18.6=100)
C2:
PF0139113=Collagen=PD(11.9=35.0),PF0139113=Collagen=PU(25.4=75.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTTGGCTTCCCTGGGAGAGA
R:
GGGTCTCCACGTTCACCTCT
Band lengths:
117-153
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]