BtaEX6095641 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000019081 | COL7A1
Description
collagen, type VII, alpha 1 [Source:HGNC Symbol;Acc:HGNC:2214]
Coordinates
chr22:51883189-51883795:+
Coord C1 exon
chr22:51883189-51883260
Coord A exon
chr22:51883360-51883395
Coord C2 exon
chr22:51883736-51883795
Length
36 bp
Sequences
Splice sites
3' ss Seq
CTTCATCTCGCTGCCCACAGGGA
3' ss Score
9.93
5' ss Seq
AAGGTAGAT
5' ss Score
7.24
Exon sequences
Seq C1 exon
GGTCTGGCAGGTGCCCCAGGGAGAGAGGGAGCCCCAGGTCCCTTGGGGCCGCCTGGACCACCTGGGTCAGCG
Seq A exon
GGAGTACCTGGGGTCCCTGGACTCAAAGGAGACAAG
Seq C2 exon
GGTGACACTGGAGCAGGGCTGCCTGGGGCCCGAGGCGAGCGTGGGGAGCCCGGTGTCCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019081-'98-103,'98-101,99-103=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(0.1=0.0),PF0139113=Collagen=FE(38.3=100)
A:
PF0139113=Collagen=FE(18.3=100)
C2:
PF0139113=Collagen=PD(8.3=25.0),PF0139113=Collagen=PU(25.0=75.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCCCCAGGGAGAGAGG
R:
CAGCCCTGCTCCAGTGTCA
Band lengths:
83-119
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]