HsaEX6055830 @ hg19
Exon Skipping
Gene
ENSG00000114270 | COL7A1
Description
collagen, type VII, alpha 1 [Source:HGNC Symbol;Acc:2214]
Coordinates
chr3:48607708-48608143:-
Coord C1 exon
chr3:48608072-48608143
Coord A exon
chr3:48607898-48607933
Coord C2 exon
chr3:48607708-48607767
Length
36 bp
Sequences
Splice sites
3' ss Seq
CACCTCACTCTGACCTACAGGGA
3' ss Score
6.69
5' ss Seq
AAGGTAGGT
5' ss Score
10.29
Exon sequences
Seq C1 exon
GGTCTGGCAGGCCCCCCAGGGAGAGAAGGAATCCCAGGACCCCTGGGGCCACCTGGACCACCGGGGTCAGTG
Seq A exon
GGACCACCTGGGGCCTCTGGACTCAAAGGAGACAAG
Seq C2 exon
GGAGACCCTGGAGTAGGGCTGCCTGGGCCCCGAGGCGAGCGTGGGGAGCCAGGCATCCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000114270-'98-103,'98-101,99-103=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(8.6=20.8),PF0139113=Collagen=FE(39.0=100)
A:
PF0139113=Collagen=FE(18.6=100)
C2:
PF0139113=Collagen=PD(6.8=20.0),PF0139113=Collagen=PU(23.7=70.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCAGGGAGAGAAGGAATCC
R:
GGATGCCTGGCTCCCCAC
Band lengths:
117-153
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)