DreEX0023512 @ danRer10
Exon Skipping
Gene
ENSDARG00000021720 | col7a1
Description
collagen, type VII, alpha 1 [Source:ZFIN;Acc:ZDB-GENE-030131-2427]
Coordinates
chr6:40209333-40211900:-
Coord C1 exon
chr6:40211829-40211900
Coord A exon
chr6:40211692-40211727
Coord C2 exon
chr6:40209333-40209392
Length
36 bp
Sequences
Splice sites
3' ss Seq
TGTCCTTATCTTCATATTAGGGT
3' ss Score
9.43
5' ss Seq
AAGGTATGT
5' ss Score
9.79
Exon sequences
Seq C1 exon
GGTCTTAACGGAATTATAGGCAAAACAGGAAATCCAGGAACACCAGGAGATGCTGGACCACCTGGACCCACT
Seq A exon
GGTGCTGCAGGCCTTCCAGGACTTAAGGGTGATAAG
Seq C2 exon
GGTGAAATTGGTGTTGGAGTGCCAGGTCAAAGAGGGGAGCGGGGAGACCCAGGACCTCGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000021720_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(38.3=100)
A:
PF0139113=Collagen=FE(18.3=100)
C2:
PF0139113=Collagen=PD(8.3=25.0),PF0139113=Collagen=PU(26.2=80.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGCAAAACAGGAAATCCAGGA
R:
CGAGGTCCTGGGTCTCCC
Band lengths:
114-150
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]