DreEX6026089 @ danRer10
Exon Skipping
Gene
ENSDARG00000062661 | abca4b
Description
ATP-binding cassette, sub-family A (ABC1), member 4b [Source:ZFIN;Acc:ZDB-GENE-050517-4]
Coordinates
chr2:15611154-15614645:+
Coord C1 exon
chr2:15611154-15611228
Coord A exon
chr2:15611351-15611520
Coord C2 exon
chr2:15614468-15614645
Length
170 bp
Sequences
Splice sites
3' ss Seq
ATTGTACTTCCTTGTCGCAGGTG
3' ss Score
8.35
5' ss Seq
TGTGTGAGT
5' ss Score
5.84
Exon sequences
Seq C1 exon
GGTCGCTATTCAAAGTCAGCCATGGATGAATTAGAAACTTTCCTGCACTACATGGAGAGCGAGTACAATGTTAAG
Seq A exon
GTGTGGTATAATAACAAAGGCTGGCATGCCATGGCCTCCTTCCTGAACGTAGCAAACAATGCCATTCTCCGTGCATATCTGCCACCTCATGCCAACCCATCAGACTACGGAATTACTGCCATCAATCATCCTCTCAACCTCACCAAAGAGCAGCTCTCAGAGGTCACTGT
Seq C2 exon
TCTCACCACATCAGTGGATGCAGTGGTGGCCATCTGCGTCATATTTGCCATGTCCTTCATCCCAGCCAGCTTCGTCCTCTACCTCATTCAGGAACGAGTCACCAAGGCCAAACATCTGCAGTTTGTCAGTGGAGTCAGTCCTTTGGTCTACTGGTTTGCCAACTTTTTCTGGGATATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000062661-'42-40,'42-39,43-40=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(6.2=100)
A:
PF126982=ABC2_membrane_3=FE(14.6=100)
C2:
PF126982=ABC2_membrane_3=FE(15.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTCGCTATTCAAAGTCAGCCA
R:
TCCCAGAAAAAGTTGGCAAACC
Band lengths:
249-419
Functional annotations
There are 1 annotated functions for this event
PMID: 11320094
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: not specified. ELM ID: ELMI000568; ELM sequence: LNLTKE; Overlap: FULL
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]