GgaEX6044190 @ galGal4
Exon Skipping
Gene
ENSGALG00000005752 | ABCA4
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1N8D7]
Coordinates
chr8:12666318-12668114:+
Coord C1 exon
chr8:12666318-12666392
Coord A exon
chr8:12666851-12667020
Coord C2 exon
chr8:12667937-12668114
Length
170 bp
Sequences
Splice sites
3' ss Seq
ATGCTTTCTGACTCTTTTAGGTG
3' ss Score
10.68
5' ss Seq
CGTGTAAGT
5' ss Score
8.58
Exon sequences
Seq C1 exon
GGACAAACTTCACTGGCTGCTGCTAAAGAATTTTCTAATTTCCTTAAATACATGGAAACTGAAGATAATATTAAG
Seq A exon
GTGTGGTTTAACAATAAAGGCTGGCACGCTATGGTTAGTTTCCTTAACGTAGCCAATAATGCAATCCTTAGAGCTAGTCTGAGGACTGGCCAAGCCCCTGAGGAGTATGGGATCACTGCTGTAAACCATCCTCTGAACCTCACTAAGGAACAGCTCTCTGAAGTCACCGT
Seq C2 exon
GCTGACCACCTCAGTGGATGCTGTTGTTGCCATCTGTGTGATTTTTGCCATGTCCTTTATTCCAGCTAGTTTTGTTTTATACCTGATTCAAGAACGTGTGACAAAAGCCAAGCATCTCCAGTTTGTTAGTGGTGTTAGCCCTGCTATGTACTGGCTAACTAACTTCACGTGGGACATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005752-'41-43,'41-41,42-43=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(7.3=100)
A:
PF126982=ABC2_membrane_3=FE(17.1=100)
C2:
PF126982=ABC2_membrane_3=FE(18.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACAAACTTCACTGGCTGCT
R:
CCCACGTGAAGTTAGTTAGCCA
Band lengths:
248-418
Functional annotations
There are 1 annotated functions for this event
PMID: 11320094
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: not specified. ELM ID: ELMI000568; ELM sequence: LNLTKE; Overlap: FULL
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]