DreEX6041424 @ danRer10
Exon Skipping
Gene
ENSDARG00000000189 | sema6e
Description
sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6E [Source:ZFIN;Acc:ZDB-GENE-040724-119]
Coordinates
chr16:30269013-30279160:+
Coord C1 exon
chr16:30269013-30269069
Coord A exon
chr16:30271245-30271346
Coord C2 exon
chr16:30279070-30279160
Length
102 bp
Sequences
Splice sites
3' ss Seq
CAGTGTCTTGTCTTTCACAGGAT
3' ss Score
10.09
5' ss Seq
AAGGTATGA
5' ss Score
9.11
Exon sequences
Seq C1 exon
AAACTGACATGGAAGACAAAAGATGTGGAGAAATGCACAGTCAGGGGGAAAAACAGC
Seq A exon
GATGAGTGTTACAACTACATCAAAGTGCTGGTGCCACGTAACGATGAAACCCTCTTTGCGTGCGGAACCAATGCGTTCAACCCCACCTGTCGCAACTACAAG
Seq C2 exon
ATGTCATCTCTAGAGCAGGACGGAGAAGAGGTGATCGGTCAAGCCCGCTGCCCTTTCGAGTCCCGCCAGTCCAACGTTGGCCTGTTTGCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000000189-'5-9,'5-6,6-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(4.3=100)
A:
PF0140314=Sema=FE(7.8=100)
C2:
PF0140314=Sema=FE(7.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAACTGACATGGAAGACAAAAGATG
R:
GCAAACAGGCCAACGTTG
Band lengths:
146-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]