DreEX6052545 @ danRer10
Exon Skipping
Gene
ENSDARG00000088631 | TRERF1
Description
transcriptional regulating factor 1 [Source:HGNC Symbol;Acc:HGNC:18273]
Coordinates
chr17:6085068-6093433:+
Coord C1 exon
chr17:6085068-6085256
Coord A exon
chr17:6088511-6088796
Coord C2 exon
chr17:6093379-6093433
Length
286 bp
Sequences
Splice sites
3' ss Seq
GTTAACCTCACACGTTCTAGATA
3' ss Score
4.78
5' ss Seq
CTGGTCAGT
5' ss Score
6.6
Exon sequences
Seq C1 exon
AGAGACGGGCAAATGAATATGTGTGCTGAAGTTCCTCAGGGGAACCCCATCATCTTACCCGTTTCAGTCCCAGTCAAGAATTACCAAACCCAGACCAAACTCACACTCCTGTGCCAGCAGAAAGATGATGGTTTAATAAAGTCTTGTGCGCAGACCCCCCTCCCACCGCTCCGAAACCACCCTTCCTGT
Seq A exon
ATAAAGAGATCCAACTCAGAGGGAGAGTCTGCACCAAAGCAAGTGAAGAAGAAATACCGCCACTGTCTGGTGCCGCTGATGATTCCTTCACCCAGCGACGGTCAGGAATCTCGAGGCGCTGTGCTCTTCCGCAGTCAGCTGAGGACGGCCAGCAGCATGTCTGACGACGCACCGTACACCCCTCCGCCAATGCTCAGCCCCGCACGCCCTGGGTCAGGCCTCTTCAGTGCAGTCAGCGGCCGGGCAAACATCCAATCTACTCCAGAAAGACTGCTCTCCAGGGCTG
Seq C2 exon
GAGAAATGGATGACTGTGGCGAGACTTTAAAAGAGACAGCCATTAACGTGACACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000088631-'6-6,'6-5,7-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.349 A=0.802 C2=0.474
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGACGGGCAAATGAATATGTGT
R:
GGTGTCACGTTAATGGCTGTCT
Band lengths:
244-530
Functional annotations
There are 1 annotated functions for this event
PMID: 26538579
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: filter binding. ELM ID: ELMI003308; ELM sequence: RHRPEPLFI; Overlap: FULL
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]