DreEX6078174 @ danRer10
Exon Skipping
Gene
ENSDARG00000018854 | scaf4b
Description
SR-related CTD-associated factor 4b [Source:ZFIN;Acc:ZDB-GENE-050506-42]
Coordinates
chr15:42340256-42341259:+
Coord C1 exon
chr15:42340256-42340467
Coord A exon
chr15:42340591-42340686
Coord C2 exon
chr15:42341174-42341259
Length
96 bp
Sequences
Splice sites
3' ss Seq
TGCTGAGATGTTTGCTTCAGTTG
3' ss Score
3.09
5' ss Seq
AAGGTAAAC
5' ss Score
8.14
Exon sequences
Seq C1 exon
CATCTCCAGCCATACCAGTAGAAGTACCAGTGCCGGTTCTAGTTCCAGTTCCAGCACCGGGTCCAGCACCAGTTCCGGTTCCAGTTCCGATTCTCGAGCCGGCCCCAGCTCTGGCACCAGCTGTTGTGACTGCAGCACCTCCGCCCACCCTTCAGACCCCAGTGCCTCTCGCTGCAGTCGCGCAGCTCCTCCAGGGCACAGGGGGTGTAGAG
Seq A exon
TTGCAGCAGCTGCTCCAAACTCTCCAGCAGGCTGGAGGGGCGGGGCCTCCTCAGCCCAAAGCCCCGCCCACTGAGAAGAAACCATCATTAGCAAAG
Seq C2 exon
TCACTGCTGGATCGATTTGATTATGATGATGAACCCGAACCTGTTGAGGAAAAGCCTGAACCTGCTCCTGCTGCTCCCATTACCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000018854-'7-9,'7-8,9-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.211 A=0.938 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTTGTGACTGCAGCACCTC
R:
ATGGTAATGGGAGCAGCAGGA
Band lengths:
178-274
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]