DreEX6099162 @ danRer10
Exon Skipping
Gene
ENSDARG00000101868 | dennd1b
Description
DENN/MADD domain containing 1B [Source:ZFIN;Acc:ZDB-GENE-060503-16]
Coordinates
chr22:23423691-23426420:+
Coord C1 exon
chr22:23423691-23423731
Coord A exon
chr22:23424571-23424609
Coord C2 exon
chr22:23426364-23426420
Length
39 bp
Sequences
Splice sites
3' ss Seq
TTCTGATCTCTTTTGCATAGCGG
3' ss Score
5.92
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
Exon sequences
Seq C1 exon
GTAATTCGAAGTCTTATCAACAGTGGATTCACACCAAGATG
Seq A exon
CGGGAGAGGGCGAAACCAGTCGTGAAGAACTTTCAGATG
Seq C2 exon
GCCAAAGATCACGCGAAGCGGAAAATACGCGACATGAAGGACAAGATTACACAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000101868-'18-27,'18-26,19-27=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.140 A=0.375 C2=0.759
Domain overlap (PFAM):
C1:
PF0301110=PFEMP=FE(14.4=100)
A:
PF0301110=PFEMP=FE(13.4=100)
C2:
PF0301110=PFEMP=FE(19.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GTAATTCGAAGTCTTATCAACAGTGG
R:
TTTGTGTAATCTTGTCCTTCATGTCG
Band lengths:
96-135
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]