GgaEX0000843 @ galGal3
Exon Skipping
Gene
ENSGALG00000000847 | GARNL3
Description
NA
Coordinates
chr17:11152141-11153519:+
Coord C1 exon
chr17:11152141-11152216
Coord A exon
chr17:11152820-11152918
Coord C2 exon
chr17:11153416-11153519
Length
99 bp
Sequences
Splice sites
3' ss Seq
GTTCTCCTTTCCATGTGTAGAAA
3' ss Score
9.04
5' ss Seq
AAAGTAAGA
5' ss Score
6.91
Exon sequences
Seq C1 exon
GGATCTGTGAATTTTAAATTTGGAGTCCTTTATGCTAAGGATGGGCAGCTTACAGATGATGAAATGTTCAGCAATG
Seq A exon
AAACTGGAAGTGAGAGCTTTCAAAGATTTTTGCATCTCTTGGGTGACACAATTACTTTGAAAGGCTGGACAGGCTACAGAGGAGGACTGGACACAAAAA
Seq C2 exon
ATGATACAACAGGAACCTTTTCCATCTATACAGTTTACCAAGGGCATGAAATTATGTTCCATGTTTCGACAATGCTACCATATTCTAGAGAGAACAAACAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000847_CASSETTE2
Average complexity
S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.135 A=0.000 C2=0.107
Domain overlap (PFAM):
C1:
PF0214510=Rap_GAP=PU(2.1=15.4)
A:
PF0214510=Rap_GAP=FE(17.6=100)
C2:
PF0214510=Rap_GAP=FE(17.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGTGAATTTTAAATTTGGAGTCCT
R:
TGCTGTTTGTTCTCTCTAGAATATGG
Band lengths:
176-275
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]