RnoEX0037753 @ rn6
Exon Skipping
Gene
ENSRNOG00000057044 | Garnl3
Description
GTPase activating Rap/RanGAP domain-like 3 [Source:RGD Symbol;Acc:1564019]
Coordinates
chr3:12082615-12086318:-
Coord C1 exon
chr3:12086243-12086318
Coord A exon
chr3:12085575-12085673
Coord C2 exon
chr3:12082615-12082718
Length
99 bp
Sequences
Splice sites
3' ss Seq
ATCTGTGCCTTTTCTTGCAGAAA
3' ss Score
11.16
5' ss Seq
AAAGTAAGC
5' ss Score
7.31
Exon sequences
Seq C1 exon
GGCTCTGTGAATTTCAAATTTGGGGTTCTTTTTGCCAAAGATGGGCAGCTCACAGACGACGAGATGTTCAGCAATG
Seq A exon
AAATTGGAAGTGAAGCTTTTCAAAAATTTTTAAATCTCCTTGGTGACACCATTACTCTAAAGGGCTGGACAGGCTACCGTGGCGGTCTGGACACCAAAA
Seq C2 exon
ATAACACCACAGGGATCAACTCGGTCTATACTGTGTACCAAGGGCATGAGGTCATGTTTCACGTTTCCACCATGTTGCCGTATTCCAAAGAGAACAGACAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000057044-'20-21,'20-20,21-21
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.114
Domain overlap (PFAM):
C1:
PF0214510=Rap_GAP=PU(2.2=15.4)
A:
PF0214510=Rap_GAP=FE(17.8=100)
C2:
PF0214510=Rap_GAP=FE(18.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTCTGTGAATTTCAAATTTGGGG
R:
TCTTTGGAATACGGCAACATGGT
Band lengths:
167-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]