MmuEX0020082 @ mm9
Exon Skipping
Gene
ENSMUSG00000038860 | Garnl3
Description
GTPase activating RANGAP domain-like 3 [Source:MGI Symbol;Acc:MGI:2139309]
Coordinates
chr2:32886590-32890305:-
Coord C1 exon
chr2:32890230-32890305
Coord A exon
chr2:32889551-32889649
Coord C2 exon
chr2:32886590-32886693
Length
99 bp
Sequences
Splice sites
3' ss Seq
ATCTGTGCCTTTTCTTGCAGAAA
3' ss Score
11.16
5' ss Seq
AAAGTAAGC
5' ss Score
7.31
Exon sequences
Seq C1 exon
GGCTCTGTGAATTTCAAATTTGGGGTTCTTTTTGCCAAAGATGGGCAGCTCACAGATGACGAGATGTTCAGCAATG
Seq A exon
AAATTGGAAGTGAAGCTTTTCAAAAATTTTTAAATCTCCTCGGTGACACCATTACTCTAAAGGGCTGGACAGGCTACCGTGGCGGTCTGGACACCAAAA
Seq C2 exon
ATAACACCACAGGGATCAACTCAGTCTATACTGTGTACCAAGGGCATGAGGTCATGTTTCACGTTTCCACCATGTTGCCATATTCCAAAGAGAACAGACAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038860-'20-17,'20-16,21-17
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.007 C2=0.121
Domain overlap (PFAM):
C1:
PF0214510=Rap_GAP=PU(2.1=15.4)
A:
PF0214510=Rap_GAP=FE(17.6=100)
C2:
PF0214510=Rap_GAP=FE(18.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAAATTTGGGGTTCTTTTTGCCA
R:
CTGCTGTCTGTTCTCTTTGGA
Band lengths:
167-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: