HsaEX0027042 @ hg19
Exon Skipping
Gene
ENSG00000136895 | GARNL3
Description
GTPase activating Rap/RanGAP domain-like 3 [Source:HGNC Symbol;Acc:25425]
Coordinates
chr9:130094553-130102030:+
Coord C1 exon
chr9:130094553-130094628
Coord A exon
chr9:130095302-130095400
Coord C2 exon
chr9:130101924-130102030
Length
99 bp
Sequences
Splice sites
3' ss Seq
TACTCTACTTCTTCCTGCAGAAA
3' ss Score
9.56
5' ss Seq
AAAGTAAGC
5' ss Score
7.31
Exon sequences
Seq C1 exon
GGCTCTGTGAATTTCAAGTTTGGGGTTCTTTTTGCCAAAGATGGGCAGCTCACTGATGATGAGATGTTCAGCAATG
Seq A exon
AAATTGGAAGCGAGCCTTTTCAAAAATTTTTAAATCTTCTGGGTGACACAATCACTCTAAAGGGCTGGACGGGCTACCGTGGCGGTCTGGATACCAAAA
Seq C2 exon
GCTGAAAATATTTTCAGAAGAGAGCGTACCACTCTTTGGCCCTCCCTTGCCAACTCCACCAGTGTTTACAGACCACCAGGAATTCAGGGACTTTTTGCTAGTGAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136895_MULTIEX1-9/12=8-C2
Average complexity
C3
Mappability confidence:
92%=92=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.081
Domain overlap (PFAM):
C1:
PF0214510=Rap_GAP=PU(15.4=15.4)
A:
PF0214510=Rap_GAP=FE(17.6=100)
C2:
PF0214510=Rap_GAP=FE(19.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCTGTGAATTTCAAGTTTGGGG
R:
AGTCCCTGAATTCCTGGTGGT
Band lengths:
167-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)