DreEX6011843 @ danRer10
Exon Skipping
Gene
ENSDARG00000060631 | garnl3
Description
GTPase activating Rap/RanGAP domain-like 3 (garnl3), mRNA [Source:RefSeq mRNA;Acc:NM_001128527]
Coordinates
chr5:32793808-32794421:-
Coord C1 exon
chr5:32794346-32794421
Coord A exon
chr5:32794025-32794123
Coord C2 exon
chr5:32793808-32793911
Length
99 bp
Sequences
Splice sites
3' ss Seq
TTGCTTTGTACTATTTTCAGAAA
3' ss Score
7.42
5' ss Seq
AGAGTAGGA
5' ss Score
0.81
Exon sequences
Seq C1 exon
GGAAGCGTTAACTTTAAATTTGGTGTTCTTTATGCCAAGGACGGACAGTTGACAGATGATGAAATGTTCAGCAATG
Seq A exon
AAATGGGAAGTGAGACCTTTGAGAAATTTCTGAATCTCCTTGGTGATACGATCTGTCTACAGGGCTGGGCAGGGTACCGAGGAGGACTCGACACTAAGA
Seq C2 exon
ACGACACTACAGGAATAAATTCTATCTACACAGTCTATCAGGGTCACGAGCTCATGTTCCACGTTTCCACCATGTTACCTTATTCTAAAGAGAACAAGCAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000060631-'11-11,'11-10,12-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.077 A=0.000 C2=0.086
Domain overlap (PFAM):
C1:
PF0214510=Rap_GAP=PU(2.1=15.4)
A:
PF0214510=Rap_GAP=FE(17.6=100)
C2:
PF0214510=Rap_GAP=FE(18.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAGCGTTAACTTTAAATTTGGTGT
R:
TCTTTAGAATAAGGTAACATGGTGGA
Band lengths:
167-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]