BtaEX0015383 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000006948 | GARNL3
Description
GTPase activating Rap/RanGAP domain-like 3 [Source:HGNC Symbol;Acc:HGNC:25425]
Coordinates
chr11:98095164-98097145:+
Coord C1 exon
chr11:98095164-98095239
Coord A exon
chr11:98095879-98095977
Coord C2 exon
chr11:98097042-98097145
Length
99 bp
Sequences
Splice sites
3' ss Seq
CACTTGACCTCTTCTTACAGAAA
3' ss Score
8.62
5' ss Seq
AAAGTAAGC
5' ss Score
7.31
Exon sequences
Seq C1 exon
GGCTCTGTGAATTTCAAGTTCGGGGTTCTTTTTGCCAAAGACGGCCAGCTCACAGATGATGACATGTTCAGCAACG
Seq A exon
AAATCGGAAGTGACGCTTTTCAAAAATTTTTAAATCTGCTGGGTGACACCATCACTCTCAAGGGCTGGACAGGCTACCGTGGTGGTCTGGACACCAAAA
Seq C2 exon
ATGATACCACAGGGATTCATTCTGTTTATACCATCTACCAAGGGCATGAGATCATGTTTCATGTTTCTACCATGTTGCCGTATTCCAAAGAAAACAAACAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006948-'42-11,'42-10,43-11
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.086
Domain overlap (PFAM):
C1:
PF0214510=Rap_GAP=PU(2.1=15.4)
A:
PF0214510=Rap_GAP=FE(17.6=100)
C2:
PF0214510=Rap_GAP=FE(18.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTCTGTGAATTTCAAGTTCGG
R:
TCTTTGGAATACGGCAACATGGT
Band lengths:
167-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development