GgaEX1004920 @ galGal4
Exon Skipping
Description
NA
Coordinates
chr7:19037780-19043596:+
Coord C1 exon
chr7:19037780-19037884
Coord A exon
chr7:19038269-19038539
Coord C2 exon
chr7:19038881-19043596
Length
271 bp
Sequences
Splice sites
3' ss Seq
TTTCTTTTTTCTCCCTTCAGAAT
3' ss Score
12.49
5' ss Seq
TAGGTAAGA
5' ss Score
9.14
Exon sequences
Seq C1 exon
CTTGGAGGACAGGACATTTTTATGACAGAAGAACAAAAGAAGTATTACAATGCAATGAAGAAGTTAGGTTCCAAGAAACCACAAAAACCTATACCTAGGCCAGCG
Seq A exon
AATAAATTGCAAGGTTTGGTGTTTGATATTGTAACAAAGCAAGCATTTGACATCGGCATTATGGTCCTCATCTGTCTTAACATGGTCACCATGATGATAGAAACAGATGACCAGAGTGAACTTATGCAAAATATTTTATACTGGATTAACTTTGTCTTTGTTGTCCTTTTCACTGGAGAATGTGTCTTAAAACTGTTCTCACTCCGTTATTATTACTTCACTGTTGGCTGGAATATCTTTGATTTTGTGGTTGTTATTCTTTCAATAGTAG
Seq C2 exon
GTATGTTTTTAGCCAAGGTGATTGAAAAGTATTTTGTGTCCCCTACTTTGTTCCGAGTCATCCGACTTGCCAGAATAGGCCGCATTCTGCGTCTCATTAAAGGCGCAAAGGGAATCCGCACTCTGCTTTTTGCTCTGATGATGTCTCTTCCTGCTTTGTTCAACATTGGCCTGCTGCTCTTCTTGGTCATGTTTATCTATGCGATATTTGGCATGTCCAACTTTGCCTACGTTAAGAGGGAAGCTGGGATTGATGACATGTTCAACTTTGAAACATTTGGCAACAGCATGATCTGCCTATTTCAAATTACCACATCTGCTGGCTGGGATGGCTTGTTAGCCCCAATTCTTAACAGTGGGAAGCCAGACTGTGACCCTAACAAACCTCACCCAGGGAGCTCTGTTAAAGGCGACTGTGGCAACCCTTCGGTTGGGATTTTCTTCTTTGTCAGCTACATCATCATATCCTTTTTGGTGGTGGTGAACATGTACATTGCTGTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000027793_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.150
Domain overlap (PFAM):
C1:
NO
A:
PF0052026=Ion_trans=PU(20.4=47.3)
C2:
PF0052026=Ion_trans=PD(79.1=42.3),PF0061222=IQ=WD(100=5.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GGTTCCAAGAAACCACAAAAACCT
R:
TGTCATCAATCCCAGCTTCCC
Band lengths:
297-568
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]