DreEX6023041 @ danRer10
Exon Skipping
Gene
ENSDARG00000018032 | scn8ab
Description
sodium channel, voltage gated, type VIII, alpha subunit b [Source:ZFIN;Acc:ZDB-GENE-060906-2]
Coordinates
chr6:39394906-39399285:-
Coord C1 exon
chr6:39399181-39399285
Coord A exon
chr6:39397433-39397703
Coord C2 exon
chr6:39394906-39396062
Length
271 bp
Sequences
Splice sites
3' ss Seq
GTGTGTTTTCTTTCTCATAGAAC
3' ss Score
10.19
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
Exon sequences
Seq C1 exon
TTTGGAGGTCAGGATATCTTCATGACAGAAGAACAGAAAAAATACTACAATGCTATGAAGAAACTGGGCTCAAAGAAGCCACAGAAACCCATCCCTAGACCTCTG
Seq A exon
AACAAAATCCAGGGGATGGTATTTGACTTTGTCACTCAGCAGGCCTTTGATATTTCCATCATGATGCTCATCTGTCTTAACATGGTAACCATGATGGTGGAAACAGATGATCAGTCAGACGAGACAGAGAACATCTTGTATTGGATAAACTTCGTATTCATCGTGGCCTTCACTGGCGAGTTCGTCCTGAAACTCTTTGCGCTGCGACACTATTATTTCACCAATGGCTGGAATGTCTTTGACTGCGTCGTTGTCATTCTGTCCATTGTGG
Seq C2 exon
GTATGTTCCTGGCAGACCTCATCGAGAAATACTTTGTCTCACCAACTTTATTCAGAGTAATCCGTCTGGCTCGAATCGGCCGAATCCTGCGTCTGATTAAAGGAGCCAAGGGCATCCGGACATTACTGTTTGCTTTGATGATGTCACTTCCTGCTCTGTTCAACATTGGCTTATTGCTTTTCCTAGTCATGTTCATCTTCTCTATCTTTGGCATGTCCAACTTTGCCTACGTGAAGAGAGAAATAGGAATTGACGACATGTATAACTTTGAAACCTTTGGCAACAGCATGATCTGTCTATTCATGATCACCACATCAGCTGGCTGGGATGGCCTGTTGGCTCCTATCTTGAACTATCCGCCTGACTGCGACCCTAATAAAGAGAACCCAGGAACCACAGTTAAGGGCAACTGTGGCAATCCTTCAGTGGGAATCTTCTTCTTTGTAATGTACATTATCGTGTCTTTCCTGATTGTGGTGAACATGTACATCGCTATCATC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000018032-'31-29,'31-28,32-29=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.226
Domain overlap (PFAM):
C1:
NO
A:
PF0052026=Ion_trans=PU(20.5=47.3)
C2:
PF0052026=Ion_trans=PD(79.0=43.0),PF0061222=IQ=WD(100=5.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AACTGGGCTCAAAGAAGCCAC
R:
TCCTATTTCTCTCTTCACGTAGGCA
Band lengths:
292-563
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]