RnoEX6034125 @ rn6
Exon Skipping
Gene
ENSRNOG00000005309 | Scn8a
Description
sodium voltage-gated channel alpha subunit 8 [Source:RGD Symbol;Acc:3638]
Coordinates
chr7:142676400-142684114:+
Coord C1 exon
chr7:142676400-142676504
Coord A exon
chr7:142678280-142678550
Coord C2 exon
chr7:142682069-142684114
Length
271 bp
Sequences
Splice sites
3' ss Seq
TTTCTGTCTTTCCTCTGCAGAAC
3' ss Score
13.21
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
Exon sequences
Seq C1 exon
TTTGGAGGTCAGGACATCTTCATGACAGAGGAACAGAAGAAGTACTACAATGCCATGAAAAAGCTGGGCTCCAAGAAGCCACAGAAGCCCATCCCCCGACCCTTG
Seq A exon
AACAAAATCCAAGGGATTGTCTTTGATTTCGTCACTCAACAAGCCTTTGACATTGTGATCATGATGCTCATCTGCCTTAACATGGTGACAATGATGGTGGAGACAGACACTCAGAGCAAGCAGATGGAGAACATTCTTTACTGGATTAATCTGGTCTTTGTCATCTTCTTCACCTGCGAGTGTGTGCTCAAAATGTTTGCCTTGAGACACTACTATTTCACCATTGGCTGGAACATCTTTGACTTTGTGGTGGTCATCCTCTCCATTGTGG
Seq C2 exon
GAATGTTCCTGGCTGATATCATTGAGAAGTACTTCGTCTCCCCAACCCTATTCCGAGTTATCCGATTGGCCCGTATTGGGCGCATCTTGCGTCTGATCAAGGGCGCCAAAGGGATCCGCACCCTGCTCTTTGCCTTAATGATGTCGCTGCCCGCCCTGTTCAACATCGGCCTCCTGCTCTTCCTCGTCATGTTCATCTTCTCCATTTTTGGCATGTCCAACTTCGCATACGTGAAGCACGAGGCCGGCATTGACGACATGTTCAACTTCGAGACATTTGGCAACAGCATGATCTGTTTGTTCCAGATCACAACGTCTGCTGGCTGGGATGGCCTGCTGCTGCCAATCCTGAACCGCCCCCCTGACTGCAGCTTGGACAAAGAGCACCCAGGGAGTGGCTTCAAAGGGGACTGTGGGAACCCCTCGGTGGGCATCTTCTTCTTTGTGAGCTACATCATCATCTCCTTCCTGATTGTGGTGAACATGTACATCGCCATCATC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005309-'54-50,'54-49,55-50=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.170
Domain overlap (PFAM):
C1:
NO
A:
PF0052026=Ion_trans=PU(20.5=47.3)
C2:
PF0052026=Ion_trans=PD(79.0=43.5),PF0061222=IQ=WD(100=5.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGAAGCCACAGAAGCCCAT
R:
TGAACATGTCGTCAATGCCGG
Band lengths:
298-569
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]